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pop1 POP1 homolog, ribonuclease P/MRP subunit [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102227343, updated on 10-Mar-2024

Summary

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Gene symbol
pop1
Gene description
POP1 homolog, ribonuclease P/MRP subunit
See related
Ensembl:ENSXMAG00000002472
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 3
Exon count:
16
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 3 NC_036445.1 (28825097..28837727)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372273.1 (228191..239452)

Chromosome 3 - NC_036445.1Genomic Context describing neighboring genes Neighboring gene calphotin-like Neighboring gene reactive intermediate imine deaminase A homolog Neighboring gene NIPA like domain containing 2 Neighboring gene potassium voltage-gated channel modifier subfamily S member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in tRNA 5'-leader removal IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nucleolar ribonuclease P complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonuclease MRP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ribonucleases P/MRP protein subunit POP1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036445.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    28825097..28837727
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023331030.1 → XP_023186798.1  ribonucleases P/MRP protein subunit POP1 isoform X1

    Conserved Domains (2) summary
    pfam06978
    Location:103 → 249
    POP1; Ribonucleases P/MRP protein subunit POP1
    pfam08170
    Location:605 → 696
    POPLD; POPLD (NUC188) domain

  2. XM_023331031.1 → XP_023186799.1  ribonucleases P/MRP protein subunit POP1 isoform X2

    UniProtKB/TrEMBL
    M3ZJT3
    Related
    ENSXMAP00000002475.1, ENSXMAT00000002480.2
    Conserved Domains (2) summary
    pfam06978
    Location:99 → 245
    POP1; Ribonucleases P/MRP protein subunit POP1
    pfam08170
    Location:601 → 692
    POPLD; POPLD (NUC188) domain

  3. XM_023331033.1 → XP_023186801.1  ribonucleases P/MRP protein subunit POP1 isoform X3

    Conserved Domains (2) summary
    pfam06978
    Location:96 → 242
    POP1; Ribonucleases P/MRP protein subunit POP1
    pfam08170
    Location:598 → 689
    POPLD; POPLD (NUC188) domain
Nucleotide Protein Strain
Heading Accession and Version

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