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pde6d phosphodiesterase 6D, cGMP-specific, rod, delta [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102223445, updated on 10-Mar-2024

Summary

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Gene symbol
pde6d
Gene description
phosphodiesterase 6D, cGMP-specific, rod, delta
See related
Ensembl:ENSXMAG00000021697
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 9
Exon count:
5
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 9 NC_036451.1 (233729..244248, complement)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005375541.1 (4364..8296)

Chromosome 9 - NC_036451.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing 40 Neighboring gene prohibitin-2-like Neighboring gene ribosomal protein L36 Neighboring gene lamin B2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in sensory perception of light stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036451.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    233729..244248 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023340095.1 → XP_023195863.1  retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta

    UniProtKB/TrEMBL
    A0A3B5QQY1
    Related
    ENSXMAP00000033543.1, ENSXMAT00000034818.1
    Conserved Domains (1) summary
    pfam05351
    Location:10 → 149
    GMP_PDE_delta; GMP-PDE, delta subunit
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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