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itgb5 integrin, beta 5 [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102223398, updated on 10-Mar-2024

Summary

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Gene symbol
itgb5
Gene description
integrin, beta 5
See related
Ensembl:ENSXMAG00000005318
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 7
Exon count:
16
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 7 NC_036449.1 (2365797..2419206)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372314.1 (1349979..1404583)

Chromosome 7 - NC_036449.1Genomic Context describing neighboring genes Neighboring gene ETS variant transcription factor 5a Neighboring gene RNA binding motif protein 44 Neighboring gene tumor necrosis factor, alpha-induced protein 6 Neighboring gene replication timing regulatory factor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion mediated by integrin IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-matrix adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of integrin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
integrin beta-5
Names
integrin subunit beta 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036449.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    2365797..2419206
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005805289.2 → XP_005805346.1  integrin beta-5

    UniProtKB/TrEMBL
    M3ZT61
    Related
    ENSXMAP00000005404.1, ENSXMAT00000005410.2
    Conserved Domains (3) summary
    pfam00362
    Location:34 → 463
    Integrin_beta; Integrin, beta chain
    pfam07965
    Location:635 → 718
    Integrin_B_tail; Integrin beta tail domain
    pfam08725
    Location:745 → 781
    Integrin_b_cyt; Integrin beta cytoplasmic domain
Nucleotide Protein Strain
Heading Accession and Version

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