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edc3 enhancer of mRNA decapping 3 homolog (S. cerevisiae) [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102222496, updated on 10-Mar-2024

Summary

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Gene symbol
edc3
Gene description
enhancer of mRNA decapping 3 homolog (S. cerevisiae)
See related
Ensembl:ENSXMAG00000007377
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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See edc3 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
7
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 2 NC_036444.1 (6246400..6252555, complement)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372184.1 (5386296..5390536, complement)

Chromosome 2 - NC_036444.1Genomic Context describing neighboring genes Neighboring gene adenosine deaminase-like Neighboring gene tyrosine-protein kinase CSK-like Neighboring gene putative leucine-rich repeat-containing protein DDB_G0290503 Neighboring gene synaptotagmin XVIIIb

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in P-body assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in deadenylation-independent decapping of nuclear-transcribed mRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
enhancer of mRNA-decapping protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036444.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    6246400..6252555 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005795929.2 → XP_005795986.1  enhancer of mRNA-decapping protein 3

    UniProtKB/TrEMBL
    M3ZYW0
    Related
    ENSXMAP00000007404.1, ENSXMAT00000007412.2
    Conserved Domains (4) summary
    cd01737
    Location:2 → 65
    LSm16_N; Like-Sm protein 16, N-terminal domain
    pfam03853
    Location:272 → 427
    YjeF_N; YjeF-related protein N-terminus
    pfam09532
    Location:170 → 270
    FDF; FDF domain
    pfam16598
    Location:80 → 166
    Edc3_linker; Linker region of enhancer of mRNA-decapping protein 3
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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