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pdzrn3b PDZ domain containing RING finger 3b [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102222221, updated on 10-Mar-2024

Summary

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Gene symbol
pdzrn3b
Gene description
PDZ domain containing RING finger 3b
See related
Ensembl:ENSXMAG00000004695
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Also known as
pdzrn3
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 20
Exon count:
11
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 20 NC_036462.1 (839051..965617, complement)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005373106.1 (834..27290)

Chromosome 20 - NC_036462.1Genomic Context describing neighboring genes Neighboring gene glucoside xylosyltransferase 2 Neighboring gene protein phosphatase 4, regulatory subunit 2b Neighboring gene contactin 3b Neighboring gene uncharacterized LOC111605870

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in neuromuscular junction development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase PDZRN3
Names
PDZ domain containing ring finger 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036462.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    839051..965617 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023325438.1 → XP_023181206.1  E3 ubiquitin-protein ligase PDZRN3 isoform X1

    UniProtKB/TrEMBL
    A0A3B5QP56, A0A3B5RE63
    Related
    ENSXMAP00000040166.1, ENSXMAT00000026657.1
    Conserved Domains (3) summary
    smart00228
    Location:243 → 336
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    cd00992
    Location:418 → 500
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cl17238
    Location:17 → 58
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  2. XM_023325439.1 → XP_023181207.1  E3 ubiquitin-protein ligase PDZRN3 isoform X2

    UniProtKB/TrEMBL
    M3ZR73
    Related
    ENSXMAP00000004716.1, ENSXMAT00000004721.2
    Conserved Domains (2) summary
    cd00992
    Location:138 → 220
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cl00117
    Location:20 → 53
    PDZ; PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. ...
Nucleotide Protein Strain
Heading Accession and Version

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