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farsa phenylalanyl-tRNA synthetase subunit alpha [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102221569, updated on 10-Mar-2024

Summary

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Gene symbol
farsa
Gene description
phenylalanyl-tRNA synthetase subunit alpha
See related
Ensembl:ENSXMAG00000008832
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 16
Exon count:
13
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 16 NC_036458.1 (21627764..21635788)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372262.1 (1277324..1285284, complement)

Chromosome 16 - NC_036458.1Genomic Context describing neighboring genes Neighboring gene prostaglandin E2 receptor EP1 subtype-like Neighboring gene interleukin enhancer binding factor 3b Neighboring gene glutaryl-CoA dehydrogenase b Neighboring gene choline transporter-like protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phenylalanine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phenylalanyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of phenylalanine-tRNA ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phenylalanine--tRNA ligase alpha subunit
Names
phenylalanyl-tRNA synthetase alpha subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036458.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    21627764..21635788
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005802792.3 → XP_005802849.1  phenylalanine--tRNA ligase alpha subunit

    UniProtKB/TrEMBL
    A0A3B5Q8P4, M4A322
    Related
    ENSXMAP00000008866.1, ENSXMAT00000008880.2
    Conserved Domains (2) summary
    PLN02853
    Location:3 → 496
    PLN02853; Probable phenylalanyl-tRNA synthetase alpha chain
    cd00496
    Location:225 → 483
    PheRS_alpha_core; Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible ...
Nucleotide Protein Strain
Heading Accession and Version

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