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tagln transgelin [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102219322, updated on 10-Mar-2024

Summary

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Gene symbol
tagln
Gene description
transgelin
See related
Ensembl:ENSXMAG00000029448
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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See tagln in Genome Data Viewer
Location:
chromosome: 18
Exon count:
6
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 18 NC_036460.1 (11931865..11937918)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372296.1 (994339..996308)

Chromosome 18 - NC_036460.1Genomic Context describing neighboring genes Neighboring gene complement C1q-like protein 4 Neighboring gene cerebellin 18 Neighboring gene proprotein convertase subtilisin/kexin type 7 Neighboring gene beta-secretase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transgelin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036460.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    11931865..11937918
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023351930.1 → XP_023207698.1  transgelin isoform X2

    UniProtKB/TrEMBL
    A0A3B5QBQ6
    Conserved Domains (1) summary
    COG5199
    Location:14 → 196
    SCP1; Calponin [Cytoskeleton]

  2. XM_014470803.2 → XP_014326289.1  transgelin isoform X1

    UniProtKB/TrEMBL
    A0A3B5QBQ6
    Related
    ENSXMAP00000027684.1, ENSXMAT00000032920.1
    Conserved Domains (1) summary
    COG5199
    Location:21 → 203
    SCP1; Calponin [Cytoskeleton]
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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