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agap2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 2 [ Pundamilia nyererei ]

Gene ID: 102215857, updated on 10-Mar-2024

Summary

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Gene symbol
agap2
Gene description
ArfGAP with GTPase domain, ankyrin repeat and PH domain 2
See related
Ensembl:ENSPNYG00000022408
Gene type
protein coding
RefSeq status
MODEL
Organism
Pundamilia nyererei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Pundamilia
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
101 current PunNye1.0 (GCF_000239375.1) Unplaced Scaffold NW_005187507.1 (1901482..1937453)

NW_005187507.1Genomic Context describing neighboring genes Neighboring gene membrane-associated ring finger (C3HC4) 9 Neighboring gene tetraspanin 31 Neighboring gene zinc finger and BTB domain containing 39 Neighboring gene G protein-coupled receptor 182

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005187507.1 Unplaced Scaffold Reference PunNye1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pundamilia nyererei Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PunNye1.0

Genomic

  1. NW_005187507.1 Reference PunNye1.0

    Range
    1901482..1937453
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005741043.1 → XP_005741100.1  arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 isoform X4

    UniProtKB/TrEMBL
    A0A3B4H3G7, A0A9Y3VRC6
    Conserved Domains (8) summary
    cd04103
    Location:72 → 227
    Centaurin_gamma; Centaurin gamma (CENTG) GTPase
    smart00010
    Location:70 → 220
    small_GTPase; Small GTPase of the Ras superfamily; ill-defined subfamily
    cd00204
    Location:770 → 825
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam00169
    Location:335 → 399
    PH; PH domain
    pfam01412
    Location:603 → 717
    ArfGap; Putative GTPase activating protein for Arf
    pfam13637
    Location:770 → 822
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:770 → 799
    ANK; ANK repeat [structural motif]
    cl17171
    Location:332 → 584
    PH-like; Pleckstrin homology-like domain

  2. XM_005741044.1 → XP_005741101.1  arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 isoform X5

    UniProtKB/TrEMBL
    A0A3B4H3G7, A0A9Y3VRR6
    Related
    ENSPNYP00000029735.1, ENSPNYT00000030459.1
    Conserved Domains (8) summary
    cd04103
    Location:72 → 227
    Centaurin_gamma; Centaurin gamma (CENTG) GTPase
    smart00010
    Location:70 → 220
    small_GTPase; Small GTPase of the Ras superfamily; ill-defined subfamily
    cd00204
    Location:750 → 805
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam00169
    Location:335 → 399
    PH; PH domain
    pfam01412
    Location:583 → 697
    ArfGap; Putative GTPase activating protein for Arf
    pfam13637
    Location:750 → 802
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:750 → 779
    ANK; ANK repeat [structural motif]
    cl17171
    Location:332 → 564
    PH-like; Pleckstrin homology-like domain

  3. XM_005741040.2 → XP_005741097.1  arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A9Y3RIT1
    Conserved Domains (8) summary
    cd04103
    Location:388 → 543
    Centaurin_gamma; Centaurin gamma (CENTG) GTPase
    smart00010
    Location:386 → 536
    small_GTPase; Small GTPase of the Ras superfamily; ill-defined subfamily
    cd00204
    Location:1086 → 1141
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam00169
    Location:651 → 715
    PH; PH domain
    pfam01412
    Location:919 → 1033
    ArfGap; Putative GTPase activating protein for Arf
    pfam13637
    Location:1086 → 1138
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:1086 → 1115
    ANK; ANK repeat [structural motif]
    cl17171
    Location:648 → 900
    PH-like; Pleckstrin homology-like domain

  4. XM_005741041.2 → XP_005741098.1  arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A9Y3VK98
    Conserved Domains (8) summary
    cd04103
    Location:388 → 543
    Centaurin_gamma; Centaurin gamma (CENTG) GTPase
    smart00010
    Location:386 → 536
    small_GTPase; Small GTPase of the Ras superfamily; ill-defined subfamily
    cd00204
    Location:1066 → 1121
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd01250
    Location:648 → 880
    PH_AGAP; Arf-GAP with GTPase, ANK repeat and PH domain-containing protein Pleckstrin homology (PH) domain
    pfam00169
    Location:651 → 715
    PH; PH domain
    pfam01412
    Location:899 → 1013
    ArfGap; Putative GTPase activating protein for Arf
    pfam13637
    Location:1066 → 1118
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:1066 → 1095
    ANK; ANK repeat [structural motif]

  5. XM_005741042.2 → XP_005741099.1  arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A9Y3VNQ0
    Conserved Domains (8) summary
    cd04103
    Location:388 → 543
    Centaurin_gamma; Centaurin gamma (CENTG) GTPase
    smart00010
    Location:386 → 536
    small_GTPase; Small GTPase of the Ras superfamily; ill-defined subfamily
    cd00204
    Location:1035 → 1090
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam00169
    Location:600 → 664
    PH; PH domain
    pfam01412
    Location:868 → 982
    ArfGap; Putative GTPase activating protein for Arf
    pfam13637
    Location:1035 → 1087
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:1035 → 1064
    ANK; ANK repeat [structural motif]
    cl17171
    Location:597 → 849
    PH-like; Pleckstrin homology-like domain
Nucleotide Protein
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