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capn7 calpain 7 [ Pundamilia nyererei ]

Gene ID: 102215176, updated on 10-Mar-2024

Summary

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Gene symbol
capn7
Gene description
calpain 7
See related
Ensembl:ENSPNYG00000011779
Gene type
protein coding
RefSeq status
MODEL
Organism
Pundamilia nyererei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Pundamilia
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
101 current PunNye1.0 (GCF_000239375.1) Unplaced Scaffold NW_005187491.1 (413285..426270)

NW_005187491.1Genomic Context describing neighboring genes Neighboring gene C-type lectin domain family 12 member B-like Neighboring gene uncharacterized LOC102214899 Neighboring gene SH3-domain binding protein 5b (BTK-associated) Neighboring gene DBF4-type zinc finger-containing protein 2 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005187491.1 Unplaced Scaffold Reference PunNye1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pundamilia nyererei Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PunNye1.0

Genomic

  1. NW_005187491.1 Reference PunNye1.0

    Range
    413285..426270
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005739268.1 → XP_005739325.1  calpain-7

    UniProtKB/TrEMBL
    A0A3B4FYC6, A0A9Y3REJ6
    Related
    ENSPNYP00000015635.1, ENSPNYT00000016033.1
    Conserved Domains (4) summary
    smart00720
    Location:565 → 688
    calpain_III; calpain_III domain
    sd00006
    Location:39 → 76
    TPR; TPR repeat [structural motif]
    cl00051
    Location:308 → 416
    CysPc; Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
    cl00299
    Location:85 → 159
    MIT; MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar ...
Nucleotide Protein
Heading Accession and Version

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