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crot carnitine O-octanoyltransferase [ Pundamilia nyererei ]

Gene ID: 102214700, updated on 31-Jan-2024

Summary

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Gene symbol
crot
Gene description
carnitine O-octanoyltransferase
See related
Ensembl:ENSPNYG00000006312 Ensembl:ENSPNYG00000006371
Gene type
protein coding
RefSeq status
MODEL
Organism
Pundamilia nyererei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Pundamilia
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Genomic context

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Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
101 current PunNye1.0 (GCF_000239375.1) Unplaced Scaffold NW_005187446.1 (3954115..3971872, complement)

NW_005187446.1Genomic Context describing neighboring genes Neighboring gene RUN domain containing 3b Neighboring gene ATP-binding cassette, sub-family B (MDR/TAP), member 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005187446.1 Unplaced Scaffold Reference PunNye1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carnitine O-octanoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables fatty-acyl-CoA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
peroxisomal carnitine O-octanoyltransferase
Names
acyl-CoA-binding protein homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pundamilia nyererei Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PunNye1.0

Genomic

  1. NW_005187446.1 Reference PunNye1.0

    Range
    3954115..3971872 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013910588.1 → XP_013766042.1  peroxisomal carnitine O-octanoyltransferase isoform X3

    UniProtKB/TrEMBL
    A0A9Y6J9S5
    Conserved Domains (2) summary
    pfam00755
    Location:65 → 629
    Carn_acyltransf; Choline/Carnitine o-acyltransferase
    cl00221
    Location:3 → 64
    ACBP; Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a ...

  2. XM_005732166.1 → XP_005732223.1  peroxisomal carnitine O-octanoyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A3B4FEB5
    Related
    ENSPNYP00000008293.1, ENSPNYT00000008494.1
    Conserved Domains (1) summary
    pfam00755
    Location:20 → 603
    Carn_acyltransf; Choline/Carnitine o-acyltransferase

  3. XM_005732167.2 → XP_005732224.1  peroxisomal carnitine O-octanoyltransferase isoform X2

    See identical proteins and their annotated locations for XP_005732224.1

    UniProtKB/TrEMBL
    A0A3B4FED9, A0A9Y3R517
    Related
    ENSPNYP00000008313.1, ENSPNYT00000008514.1
    Conserved Domains (1) summary
    cd00435
    Location:3 → 87
    ACBP; Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a ...
Nucleotide Protein
Heading Accession and Version

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