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robo3 roundabout, axon guidance receptor, homolog 3 (Drosophila) [ Pundamilia nyererei ]

Gene ID: 102211800, updated on 10-Mar-2024

Summary

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Gene symbol
robo3
Gene description
roundabout, axon guidance receptor, homolog 3 (Drosophila)
See related
Ensembl:ENSPNYG00000014983
Gene type
protein coding
RefSeq status
MODEL
Organism
Pundamilia nyererei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Pundamilia
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
29
Annotation release Status Assembly Chr Location
101 current PunNye1.0 (GCF_000239375.1) Unplaced Scaffold NW_005187498.1 (778668..945741, complement)

NW_005187498.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 218 Neighboring gene roundabout, axon guidance receptor, homolog 4 (Drosophila) Neighboring gene Myb/SANT DNA binding domain containing 2 Neighboring gene endothelial cell adhesion molecule a

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005187498.1 Unplaced Scaffold Reference PunNye1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
roundabout homolog 3
Names
roundabout guidance receptor 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pundamilia nyererei Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PunNye1.0

Genomic

  1. NW_005187498.1 Reference PunNye1.0

    Range
    778668..945741 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005740104.1 → XP_005740161.1  roundabout homolog 3 isoform X4

    UniProtKB/TrEMBL
    A0A3B4GE55, A0A9Y3RDG8
    Conserved Domains (7) summary
    cd07693
    Location:68 → 167
    Ig1_Robo; First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins
    smart00408
    Location:469 → 528
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:462 → 543
    IG_like; Immunoglobulin like
    cd00063
    Location:561 → 655
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:263 → 348
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:687 → 748
    fn3; Fibronectin type III domain
    cl11960
    Location:366 → 455
    Ig; Immunoglobulin domain

  2. XM_005740102.1 → XP_005740159.1  roundabout homolog 3 isoform X2

    UniProtKB/TrEMBL
    A0A3B4GE55, A0A9Y3RN60
    Related
    ENSPNYP00000019878.1, ENSPNYT00000020370.1
    Conserved Domains (7) summary
    cd07693
    Location:68 → 167
    Ig1_Robo; First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins
    smart00408
    Location:469 → 528
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:462 → 543
    IG_like; Immunoglobulin like
    cd00063
    Location:561 → 655
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:263 → 348
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:687 → 748
    fn3; Fibronectin type III domain
    cl11960
    Location:366 → 455
    Ig; Immunoglobulin domain

  3. XM_005740101.1 → XP_005740158.1  roundabout homolog 3 isoform X1

    UniProtKB/TrEMBL
    A0A3B4GE55, A0A9Y3RQI7
    Conserved Domains (7) summary
    cd07693
    Location:68 → 167
    Ig1_Robo; First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins
    smart00408
    Location:473 → 532
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:466 → 547
    IG_like; Immunoglobulin like
    cd00063
    Location:565 → 659
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:263 → 348
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:691 → 752
    fn3; Fibronectin type III domain
    cl11960
    Location:370 → 459
    Ig; Immunoglobulin domain

  4. XM_005740103.1 → XP_005740160.1  roundabout homolog 3 isoform X3

    UniProtKB/TrEMBL
    A0A3B4GE55, A0A9Y3RQY9
    Conserved Domains (7) summary
    cd07693
    Location:31 → 130
    Ig1_Robo; First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins
    smart00408
    Location:436 → 495
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:429 → 510
    IG_like; Immunoglobulin like
    cd00063
    Location:528 → 622
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:226 → 311
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:654 → 715
    fn3; Fibronectin type III domain
    cl11960
    Location:333 → 422
    Ig; Immunoglobulin domain
Nucleotide Protein
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