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mdc1 mediator of DNA damage checkpoint 1 [ Pundamilia nyererei ]

Gene ID: 102209930, updated on 10-Mar-2024

Summary

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Gene symbol
mdc1
Gene description
mediator of DNA damage checkpoint 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Pundamilia nyererei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Pundamilia
Orthologs
human zebrafish all
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Genomic context

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See mdc1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
101 current PunNye1.0 (GCF_000239375.1) Unplaced Scaffold NW_005187446.1 (722065..733221, complement)

NW_005187446.1Genomic Context describing neighboring genes Neighboring gene zinc-binding protein A33-like Neighboring gene uncharacterized LOC102209169 Neighboring gene tubulin, beta 5 Neighboring gene flotillin 1b

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005187446.1 Unplaced Scaffold Reference PunNye1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription initiation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mediator of DNA damage checkpoint protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pundamilia nyererei Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PunNye1.0

Genomic

  1. NW_005187446.1 Reference PunNye1.0

    Range
    722065..733221 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013910571.1 → XP_013766025.1  mediator of DNA damage checkpoint protein 1

    UniProtKB/TrEMBL
    A0A3B4H8T6, A0A9Y6JCM6
    Conserved Domains (3) summary
    smart00292
    Location:1979 → 2051
    BRCT; breast cancer carboxy-terminal domain
    cd00060
    Location:50 → 154
    FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
    pfam06273
    Location:1291 → 1365
    eIF-4B; Plant specific eukaryotic initiation factor 4B
Nucleotide Protein
Heading Accession and Version

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