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agrn agrin [ Pundamilia nyererei ]

Gene ID: 102207024, updated on 10-Mar-2024

Summary

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Gene symbol
agrn
Gene description
agrin
See related
Ensembl:ENSPNYG00000014019
Gene type
protein coding
RefSeq status
MODEL
Organism
Pundamilia nyererei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Pundamilia
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
39
Annotation release Status Assembly Chr Location
101 current PunNye1.0 (GCF_000239375.1) Unplaced Scaffold NW_005187440.1 (3088012..3343826, complement)

NW_005187440.1Genomic Context describing neighboring genes Neighboring gene ring finger protein 223 Neighboring gene protein tyrosine phosphatase non-receptor type 11b Neighboring gene mechanistic target of rapamycin kinase Neighboring gene angiopoietin-like 7 Neighboring gene TAFA chemokine like family member 5, like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005187440.1 Unplaced Scaffold Reference PunNye1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables laminin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in G protein-coupled acetylcholine receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in receptor clustering IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
agrin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pundamilia nyererei Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PunNye1.0

Genomic

  1. NW_005187440.1 Reference PunNye1.0

    Range
    3088012..3343826 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013910251.1 → XP_013765705.1  agrin

    UniProtKB/TrEMBL
    A0A3B4GA92, A0A9Y6M5S5
    Related
    ENSPNYP00000018558.1, ENSPNYT00000019021.1
    Conserved Domains (9) summary
    smart00280
    Location:479 → 524
    KAZAL; Kazal type serine protease inhibitors
    cd00054
    Location:1837 → 1868
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00110
    Location:1392 → 1542
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00008
    Location:1351 → 1379
    EGF; EGF-like domain
    pfam00053
    Location:782 → 824
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:1931 → 2062
    Laminin_G_1; Laminin G domain
    pfam03146
    Location:31 → 146
    NtA; Agrin NtA domain
    pfam06640
    Location:1017 → 1102
    P_C; P protein C-terminus
    cl02507
    Location:1146 → 1259
    SEA; SEA domain
Nucleotide Protein
Heading Accession and Version

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