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yif1b Yip1 interacting factor homolog B (S. cerevisiae) [ Pundamilia nyererei ]

Gene ID: 102204804, updated on 10-Mar-2024

Summary

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Gene symbol
yif1b
Gene description
Yip1 interacting factor homolog B (S. cerevisiae)
See related
Ensembl:ENSPNYG00000015444
Gene type
protein coding
RefSeq status
MODEL
Organism
Pundamilia nyererei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Pundamilia
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
101 current PunNye1.0 (GCF_000239375.1) Unplaced Scaffold NW_005187404.1 (4940900..4945763, complement)

NW_005187404.1Genomic Context describing neighboring genes Neighboring gene NACHT and WD repeat domain-containing protein 2-like Neighboring gene probable E3 ubiquitin-protein ligase HERC6 Neighboring gene uncharacterized protein C14orf132-like Neighboring gene HHIP-like protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005187404.1 Unplaced Scaffold Reference PunNye1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein YIF1B
Names
Yip1 interacting factor homolog B, membrane trafficking protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pundamilia nyererei Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PunNye1.0

Genomic

  1. NW_005187404.1 Reference PunNye1.0

    Range
    4940900..4945763 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005720753.2 → XP_005720810.1  protein YIF1B isoform X3

    UniProtKB/TrEMBL
    A0A9Y3QL45
    Conserved Domains (1) summary
    pfam03878
    Location:60 → 295
    YIF1

  2. XM_013910580.1 → XP_013766034.1  protein YIF1B isoform X2

    UniProtKB/TrEMBL
    A0A9Y6M8Z8
    Conserved Domains (1) summary
    pfam03878
    Location:65 → 300
    YIF1

  3. XM_013910577.1 → XP_013766031.1  protein YIF1B isoform X1

    UniProtKB/TrEMBL
    A0A3B4GFP9
    Related
    ENSPNYP00000020408.1, ENSPNYT00000020910.1
    Conserved Domains (1) summary
    pfam03878
    Location:68 → 303
    YIF1

  4. XM_005720754.1 → XP_005720811.1  protein YIF1B isoform X4

    See identical proteins and their annotated locations for XP_005720811.1

    UniProtKB/TrEMBL
    A0A9Y3QSY7
    Conserved Domains (1) summary
    pfam03878
    Location:50 → 284
    YIF1; YIF1
Nucleotide Protein
Heading Accession and Version

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