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col28a1b collagen, type XXVIII, alpha 1b [ Pundamilia nyererei ]

Gene ID: 102204083, updated on 10-Mar-2024

Summary

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Gene symbol
col28a1b
Gene description
collagen, type XXVIII, alpha 1b
Gene type
protein coding
RefSeq status
MODEL
Organism
Pundamilia nyererei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Pundamilia
Also known as
col28a1
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
35
Annotation release Status Assembly Chr Location
101 current PunNye1.0 (GCF_000239375.1) Unplaced Scaffold NW_005187714.1 (412896..436297)

NW_005187714.1Genomic Context describing neighboring genes Neighboring gene glucocorticoid-induced transcript 1 protein-like Neighboring gene missing oocyte, meiosis regulator, homolog (Drosophila) Neighboring gene uncharacterized LOC102206249 Neighboring gene uncharacterized LOC102204375

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005187714.1 Unplaced Scaffold Reference PunNye1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serine-type endopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in angiogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endothelial cell morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-1(XXVIII) chain
Names
collagen type XXVIII alpha 1 chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pundamilia nyererei Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PunNye1.0

Genomic

  1. NW_005187714.1 Reference PunNye1.0

    Range
    412896..436297
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005751483.1 → XP_005751540.1  collagen alpha-1(XXVIII) chain isoform X1

    UniProtKB/TrEMBL
    A0A9Y3VTL2
    Conserved Domains (4) summary
    pfam01391
    Location:495 → 552
    Collagen; Collagen triple helix repeat (20 copies)
    cd01450
    Location:52 → 217
    vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    pfam00014
    Location:1139 → 1191
    Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain
    pfam00092
    Location:807 → 984
    VWA; von Willebrand factor type A domain

  2. XM_013915502.1 → XP_013770956.1  collagen alpha-1(XXVIII) chain isoform X2

    UniProtKB/TrEMBL
    A0A9Y6MB40
    Conserved Domains (4) summary
    pfam01391
    Location:494 → 551
    Collagen; Collagen triple helix repeat (20 copies)
    cd01450
    Location:51 → 216
    vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    pfam00014
    Location:1138 → 1190
    Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain
    pfam00092
    Location:806 → 983
    VWA; von Willebrand factor type A domain
Nucleotide Protein
Heading Accession and Version

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