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nod1 nucleotide-binding oligomerization domain containing 1 [ Pundamilia nyererei ]

Gene ID: 102203293, updated on 10-Mar-2024

Summary

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Gene symbol
nod1
Gene description
nucleotide-binding oligomerization domain containing 1
See related
Ensembl:ENSPNYG00000017176
Gene type
protein coding
RefSeq status
MODEL
Organism
Pundamilia nyererei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Pundamilia
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
101 current PunNye1.0 (GCF_000239375.1) Unplaced Scaffold NW_005187565.1 (1374965..1387867, complement)

NW_005187565.1Genomic Context describing neighboring genes Neighboring gene frizzled class receptor 1 Neighboring gene zinc and ring finger 2b Neighboring gene fibroblast growth factor receptor-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005187565.1 Unplaced Scaffold Reference PunNye1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nucleotide-binding oligomerization domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pundamilia nyererei Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PunNye1.0

Genomic

  1. NW_005187565.1 Reference PunNye1.0

    Range
    1374965..1387867 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005745734.1 → XP_005745791.1  nucleotide-binding oligomerization domain-containing protein 1

    See identical proteins and their annotated locations for XP_005745791.1

    UniProtKB/TrEMBL
    A0A3B4GIG0
    Related
    ENSPNYP00000022730.1, ENSPNYT00000023290.1
    Conserved Domains (4) summary
    cd00116
    Location:666 → 929
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    cd08324
    Location:14 → 97
    CARD_NOD1_CARD4; Caspase activation and recruitment domain similar to that found in NOD1
    sd00033
    Location:744 → 771
    LRR_RI; leucine-rich repeat [structural motif]
    pfam05729
    Location:189 → 352
    NACHT; NACHT domain

  2. XM_005745733.1 → XP_005745790.1  nucleotide-binding oligomerization domain-containing protein 1

    See identical proteins and their annotated locations for XP_005745790.1

    UniProtKB/TrEMBL
    A0A3B4GIG0
    Conserved Domains (4) summary
    cd00116
    Location:666 → 929
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    cd08324
    Location:14 → 97
    CARD_NOD1_CARD4; Caspase activation and recruitment domain similar to that found in NOD1
    sd00033
    Location:744 → 771
    LRR_RI; leucine-rich repeat [structural motif]
    pfam05729
    Location:189 → 352
    NACHT; NACHT domain
Nucleotide Protein
Heading Accession and Version

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