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mindy2 MINDY lysine 48 deubiquitinase 2 [ Pundamilia nyererei ]

Gene ID: 102199856, updated on 10-Mar-2024

Summary

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Gene symbol
mindy2
Gene description
MINDY lysine 48 deubiquitinase 2
See related
Ensembl:ENSPNYG00000013917
Gene type
protein coding
RefSeq status
MODEL
Organism
Pundamilia nyererei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Pundamilia
Also known as
fam63b
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
101 current PunNye1.0 (GCF_000239375.1) Unplaced Scaffold NW_005187513.1 (1249002..1271222, complement)

NW_005187513.1Genomic Context describing neighboring genes Neighboring gene ring finger protein 111 Neighboring gene SAFB-like, transcription modulator Neighboring gene ADAM metallopeptidase domain 10a Neighboring gene lipase, hepatic a

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005187513.1 Unplaced Scaffold Reference PunNye1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables K48-linked deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type carboxypeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein K48-linked deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell periphery IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein FAM63B
Names
family with sequence similarity 63 member B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pundamilia nyererei Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PunNye1.0

Genomic

  1. NW_005187513.1 Reference PunNye1.0

    Range
    1249002..1271222 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005741631.1 → XP_005741688.1  protein FAM63B isoform X2

    UniProtKB/TrEMBL
    A0A9Y3VRT2
    Conserved Domains (1) summary
    pfam04424
    Location:303 → 420
    DUF544; Protein of unknown function (DUF544)

  2. XM_005741630.1 → XP_005741687.1  protein FAM63B isoform X1

    UniProtKB/TrEMBL
    A0A3B4G6D5
    Related
    ENSPNYP00000018412.1, ENSPNYT00000018874.1
    Conserved Domains (1) summary
    pfam04424
    Location:303 → 420
    DUF544; Protein of unknown function (DUF544)

  3. XM_013913042.1 → XP_013768496.1  protein FAM63B isoform X3

    UniProtKB/TrEMBL
    A0A9Y6M1A0
    Conserved Domains (1) summary
    pfam04424
    Location:303 → 420
    DUF544; Protein of unknown function (DUF544)
Nucleotide Protein
Heading Accession and Version

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