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atg3 autophagy related 3 [ Pundamilia nyererei ]

Gene ID: 102196873, updated on 10-Mar-2024

Summary

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Gene symbol
atg3
Gene description
autophagy related 3
See related
Ensembl:ENSPNYG00000022098
Gene type
protein coding
RefSeq status
MODEL
Organism
Pundamilia nyererei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Pundamilia
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
101 current PunNye1.0 (GCF_000239375.1) Unplaced Scaffold NW_005187613.1 (156447..162629, complement)

NW_005187613.1Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein 1 Neighboring gene solute carrier family 19 member 2 Neighboring gene cysteinyl-tRNA synthetase 2, mitochondrial Neighboring gene DDRGK domain containing 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005187613.1 Unplaced Scaffold Reference PunNye1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Atg8-family ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagy of mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytoplasmic ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin-like-conjugating enzyme ATG3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pundamilia nyererei Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PunNye1.0

Genomic

  1. NW_005187613.1 Reference PunNye1.0

    Range
    156447..162629 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005748058.2 → XP_005748115.1  ubiquitin-like-conjugating enzyme ATG3

    See identical proteins and their annotated locations for XP_005748115.1

    UniProtKB/TrEMBL
    A0A3B4H4F3, A0A3B4H7G7
    Related
    ENSPNYP00000029329.1, ENSPNYT00000030044.1
    Conserved Domains (3) summary
    pfam03986
    Location:8 → 133
    Autophagy_N; Autophagocytosis associated protein (Atg3), N-terminal domain
    pfam03987
    Location:203 → 264
    Autophagy_act_C; Autophagocytosis associated protein, active-site domain
    pfam10381
    Location:285 → 308
    Autophagy_C; Autophagocytosis associated protein C-terminal
Nucleotide Protein
Heading Accession and Version

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