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carmil1 capping protein regulator and myosin 1 linker 1 [ Pundamilia nyererei ]

Gene ID: 102196199, updated on 31-Jan-2024

Summary

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Gene symbol
carmil1
Gene description
capping protein regulator and myosin 1 linker 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Pundamilia nyererei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Pundamilia
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Genomic context

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Location:
chromosome: Un
Exon count:
38
Annotation release Status Assembly Chr Location
101 current PunNye1.0 (GCF_000239375.1) Unplaced Scaffold NW_005187545.1 (10163..81784)

NW_005187545.1Genomic Context describing neighboring genes Neighboring gene secretagogin-like Neighboring gene cellular communication network factor 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005187545.1 Unplaced Scaffold Reference PunNye1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of Arp2/3 complex-mediated actin nucleation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lamellipodium IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat-containing protein 16A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pundamilia nyererei Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PunNye1.0

Genomic

  1. NW_005187545.1 Reference PunNye1.0

    Range
    10163..81784
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013913663.1 → XP_013769117.1  leucine-rich repeat-containing protein 16A

    UniProtKB/TrEMBL
    A0A3B4F135, A0A9Y6JG30
    Conserved Domains (5) summary
    PHA03195
    Location:1018 → 1171
    PHA03195; tegument protein VP11/12; Provisional
    COG4886
    Location:361 → 518
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    cd00116
    Location:189 → 443
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:367 → 394
    LRR_RI; leucine-rich repeat [structural motif]
    pfam16000
    Location:719 → 1006
    CARMIL_C; CARMIL C-terminus
Nucleotide Protein
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