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rnf213b ring finger protein 213b [ Pundamilia nyererei ]

Gene ID: 102193148, updated on 10-Mar-2024

Summary

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Gene symbol
rnf213b
Gene description
ring finger protein 213b
See related
Ensembl:ENSPNYG00000019688
Gene type
protein coding
RefSeq status
MODEL
Organism
Pundamilia nyererei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Pundamilia
Also known as
rnf213
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
62
Annotation release Status Assembly Chr Location
101 current PunNye1.0 (GCF_000239375.1) Unplaced Scaffold NW_005187418.1 (315659..348255, complement)

NW_005187418.1Genomic Context describing neighboring genes Neighboring gene ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase Neighboring gene centrosomal protein 131 Neighboring gene NPL4 homolog, ubiquitin recognition factor Neighboring gene zinc finger protein 235-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005187418.1 Unplaced Scaffold Reference PunNye1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of non-canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sprouting angiogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RNF213
Names
ring finger protein 213

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pundamilia nyererei Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PunNye1.0

Genomic

  1. NW_005187418.1 Reference PunNye1.0

    Range
    315659..348255 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005725937.1 → XP_005725994.1  E3 ubiquitin-protein ligase RNF213

    UniProtKB/TrEMBL
    A0A3B4GSD9, A0A9Y3R2W9
    Related
    ENSPNYP00000026107.1, ENSPNYT00000026744.1
    Conserved Domains (4) summary
    cd00009
    Location:2134 → 2245
    AAA; The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, ...
    smart00382
    Location:2134 → 2259
    AAA; ATPases associated with a variety of cellular activities
    cd00162
    Location:3746 → 3787
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    pfam05466
    Location:71 → 302
    BASP1; Brain acid soluble protein 1 (BASP1 protein)
Nucleotide Protein
Heading Accession and Version

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