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SPRTN SprT-like N-terminal domain [ Capra hircus (goat) ]

Gene ID: 102189734, updated on 10-Mar-2024

Summary

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Gene symbol
SPRTN
Gene description
SprT-like N-terminal domain
See related
EnsemblRapid:ENSCHIG00000013744
Gene type
protein coding
RefSeq status
MODEL
Organism
Capra hircus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Capra
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 28
Exon count:
6
Annotation release Status Assembly Chr Location
102 current ASM170441v1 (GCF_001704415.1) 28 NC_030835.1 (41244057..41257410, complement)
101 previous assembly CHIR_1.0 (GCF_000317765.1) 28 NC_022320.1 (2317326..2330726)

Chromosome 28 - NC_030835.1Genomic Context describing neighboring genes Neighboring gene translin associated factor X Neighboring gene egl-9 family hypoxia inducible factor 1 Neighboring gene exocyst complex component 8 Neighboring gene glyceronephosphate O-acyltransferase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables methionine adenosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables polyubiquitin modification-dependent protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in S-adenosylmethionine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sprT-like domain-containing protein Spartan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capra hircus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM170441v1 Primary Assembly

Genomic

  1. NC_030835.1 Reference ASM170441v1 Primary Assembly

    Range
    41244057..41257410 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005698975.3 → XP_005699032.1  sprT-like domain-containing protein Spartan isoform X1

    See identical proteins and their annotated locations for XP_005699032.1

    UniProtKB/TrEMBL
    A0A452EI89, A0A8C2Y4Q3
    Related
    ENSCHIP00000011668.1, ENSCHIT00000019458.2
    Conserved Domains (2) summary
    smart00734
    Location:456 → 478
    ZnF_Rad18; Rad18-like CCHC zinc finger
    pfam10263
    Location:45 → 213
    SprT-like; SprT-like family

  2. XM_005698974.3 → XP_005699031.1  sprT-like domain-containing protein Spartan isoform X1

    See identical proteins and their annotated locations for XP_005699031.1

    UniProtKB/TrEMBL
    A0A452EI89, A0A8C2Y4Q3
    Conserved Domains (2) summary
    smart00734
    Location:456 → 478
    ZnF_Rad18; Rad18-like CCHC zinc finger
    pfam10263
    Location:45 → 213
    SprT-like; SprT-like family

  3. XM_018042453.1 → XP_017897942.1  sprT-like domain-containing protein Spartan isoform X2

    UniProtKB/TrEMBL
    A0A8C2SKZ6
Nucleotide Protein
Heading Accession and Version

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