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SRRM3 serine/arginine repetitive matrix 3 [ Sus scrofa (pig) ]

Gene ID: 102159887, updated on 10-Mar-2024

Summary

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Official Symbol
SRRM3provided by VGNC
Official Full Name
serine/arginine repetitive matrix 3provided by VGNC
Primary source
VGNC:VGNC:93469
See related
Ensembl:ENSSSCG00000032250
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in ovary (RPKM 3.4), mixtures (RPKM 0.9) and 4 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
15
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 3 NC_010445.4 (10046538..10102149, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 3 NC_010445.3 (9998451..10030087, complement)

Chromosome 3 - NC_010445.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110259893 Neighboring gene heat shock protein family B (small) member 1 Neighboring gene malate dehydrogenase 2 Neighboring gene serine/threonine/tyrosine interacting like 1 Neighboring gene transmembrane protein 120A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/arginine repetitive matrix protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010445.4 Reference Sscrofa11.1 Primary Assembly

    Range
    10046538..10102149 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021086294.1 → XP_020941953.1  serine/arginine repetitive matrix protein 3

    UniProtKB/TrEMBL
    A0A4X1ULJ1, A0A5G2Q7L4, A0A5G2QVC0, A0A8D1WCC8
    Related
    ENSSSCP00000068793.2, ENSSSCT00000087794.2
    Conserved Domains (4) summary
    cd16269
    Location:108 → 119
    GBP_C; coiled coil [structural motif]
    pfam08312
    Location:56 → 98
    cwf21; cwf21 domain
    pfam15230
    Location:532 → 584
    SRRM_C; Serine/arginine repetitive matrix protein C-terminus
    cl20817
    Location:34 → 121
    GBP_C; Guanylate-binding protein, C-terminal domain
Nucleotide Protein
Heading Accession and Version

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