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SPATA1 spermatogenesis associated 1 [ Canis lupus familiaris (dog) ]

Gene ID: 102155916, updated on 10-Mar-2024

Summary

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Official Symbol
SPATA1provided by VGNC
Official Full Name
spermatogenesis associated 1provided by VGNC
Primary source
VGNC:VGNC:54069
See related
Ensembl:ENSCAFG00845001531
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
17
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 6 NC_051810.1 (63873918..63928612, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 6 NC_006588.4 (65982564..66037244, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 6 NC_049227.1 (63876819..63931485, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 6 NC_049266.1 (63402224..63456520, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 6 NC_049747.1 (63370982..63425224, complement)

Chromosome 6 - NC_051810.1Genomic Context describing neighboring genes Neighboring gene SSX family member 2 interacting protein Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC111096427 Neighboring gene chitobiase Neighboring gene uncharacterized LOC102156327 Neighboring gene G protein subunit gamma 5 Neighboring gene uncharacterized LOC119872366 Neighboring gene ribosome production factor 1 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
spermatogenesis-associated protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051810.1 Reference ROS_Cfam_1.0

    Range
    63873918..63928612 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038670287.1 → XP_038526215.1  spermatogenesis-associated protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KN25
    Conserved Domains (1) summary
    pfam15743
    Location:332 → 480
    SPATA1_C; Spermatogenesis-associated C-terminus

  2. XM_038670289.1 → XP_038526217.1  spermatogenesis-associated protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KN25, A0A8C0YWA8
    Related
    ENSCAFP00845002101.1, ENSCAFT00845002646.1
    Conserved Domains (1) summary
    pfam15743
    Location:287 → 435
    SPATA1_C; Spermatogenesis-associated C-terminus

  3. XM_038670290.1 → XP_038526218.1  spermatogenesis-associated protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KN25, A0A8C0YWA8
    Conserved Domains (1) summary
    pfam15743
    Location:287 → 435
    SPATA1_C; Spermatogenesis-associated C-terminus

  4. XM_038670288.1 → XP_038526216.1  spermatogenesis-associated protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KN25
    Conserved Domains (1) summary
    pfam15743
    Location:332 → 480
    SPATA1_C; Spermatogenesis-associated C-terminus

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049266.1 Alternate UMICH_Zoey_3.1

    Range
    63402224..63456520 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038480202.1 → XP_038336130.1  spermatogenesis-associated protein 1 isoform X2

    Conserved Domains (1) summary
    pfam15743
    Location:287 → 435
    SPATA1_C; Spermatogenesis-associated C-terminus

  2. XM_038480203.1 → XP_038336131.1  spermatogenesis-associated protein 1 isoform X2

    Conserved Domains (1) summary
    pfam15743
    Location:287 → 435
    SPATA1_C; Spermatogenesis-associated C-terminus

  3. XM_038480204.1 → XP_038336132.1  spermatogenesis-associated protein 1 isoform X2

    Conserved Domains (1) summary
    pfam15743
    Location:287 → 435
    SPATA1_C; Spermatogenesis-associated C-terminus

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049747.1 Alternate UNSW_CanFamBas_1.0

    Range
    63370982..63425224 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038605684.1 → XP_038461612.1  spermatogenesis-associated protein 1 isoform X2

    Conserved Domains (1) summary
    pfam15743
    Location:287 → 435
    SPATA1_C; Spermatogenesis-associated C-terminus

  2. XM_038605685.1 → XP_038461613.1  spermatogenesis-associated protein 1 isoform X2

    Conserved Domains (1) summary
    pfam15743
    Location:287 → 435
    SPATA1_C; Spermatogenesis-associated C-terminus

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049227.1 Alternate UU_Cfam_GSD_1.0

    Range
    63876819..63931485 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038541546.1 → XP_038397474.1  spermatogenesis-associated protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KN25

  2. XM_038541548.1 → XP_038397476.1  spermatogenesis-associated protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KN25, A0A8C0YWA8
    Conserved Domains (1) summary
    pfam15743
    Location:287 → 435
    SPATA1_C; Spermatogenesis-associated C-terminus

  3. XM_038541549.1 → XP_038397477.1  spermatogenesis-associated protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KN25, A0A8C0YWA8
    Conserved Domains (1) summary
    pfam15743
    Location:287 → 435
    SPATA1_C; Spermatogenesis-associated C-terminus

  4. XM_038541547.1 → XP_038397475.1  spermatogenesis-associated protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KN25

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006588.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    65982564..66037244 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038556417.1 → XP_038412345.1  spermatogenesis-associated protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KN25
    Conserved Domains (1) summary
    pfam15743
    Location:332 → 480
    SPATA1_C; Spermatogenesis-associated C-terminus

  2. XM_005622001.3 → XP_005622058.1  spermatogenesis-associated protein 1 isoform X2

    See identical proteins and their annotated locations for XP_005622058.1

    UniProtKB/TrEMBL
    A0A8C0KN25, A0A8C0YWA8
    Conserved Domains (1) summary
    pfam15743
    Location:287 → 435
    SPATA1_C; Spermatogenesis-associated C-terminus

  3. XM_022420574.2 → XP_022276282.1  spermatogenesis-associated protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KN25, A0A8C0YWA8
    Conserved Domains (1) summary
    pfam15743
    Location:287 → 435
    SPATA1_C; Spermatogenesis-associated C-terminus

  4. XM_022420573.2 → XP_022276281.1  spermatogenesis-associated protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KN25, A0A8C0YWA8
    Conserved Domains (1) summary
    pfam15743
    Location:287 → 435
    SPATA1_C; Spermatogenesis-associated C-terminus

  5. XM_038556427.1 → XP_038412355.1  spermatogenesis-associated protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KN25
    Conserved Domains (1) summary
    pfam15743
    Location:332 → 480
    SPATA1_C; Spermatogenesis-associated C-terminus
Nucleotide Protein
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