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LHX6 LIM homeobox 6 [ Macaca fascicularis (crab-eating macaque) ]

Gene ID: 102115285, updated on 3-Apr-2024

Summary

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Gene symbol
LHX6
Gene description
LIM homeobox 6
See related
Ensembl:ENSMFAG00000044342
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca fascicularis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 15
Exon count:
12
Annotation release Status Assembly Chr Location
102 current MFA1912RKSv2 (GCF_012559485.2) 15 NC_052269.1 (92868712..92908932, complement)
101 previous assembly Macaca_fascicularis_5.0 (GCF_000364345.1) 15 NC_022286.1 (15032766..15059229)

Chromosome 15 - NC_052269.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107127602 Neighboring gene NADH:ubiquinone oxidoreductase subunit A8 Neighboring gene MORN repeat containing 5 Neighboring gene RNA binding motif protein 18 Neighboring gene mitochondrial ribosome recycling factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in forebrain neuron development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LIM/homeobox protein Lhx6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca fascicularis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MFA1912RKSv2 Primary Assembly

Genomic

  1. NC_052269.1 Reference MFA1912RKSv2 Primary Assembly

    Range
    92868712..92908932 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045373781.1 → XP_045229716.1  LIM/homeobox protein Lhx6 isoform X4

  2. XM_045373780.1 → XP_045229715.1  LIM/homeobox protein Lhx6 isoform X3

  3. XM_005580887.3 → XP_005580944.1  LIM/homeobox protein Lhx6 isoform X2

    See identical proteins and their annotated locations for XP_005580944.1

    UniProtKB/TrEMBL
    A0A2K5VMB9, A0A2K5VMC6
    Related
    ENSMFAP00000025839.1
    Conserved Domains (3) summary
    cd09380
    Location:99 → 152
    LIM1_Lhx6; The first LIM domain of Lhx6
    cd09382
    Location:160 → 214
    LIM2_Lhx6; The second LIM domain of Lhx6
    pfam00046
    Location:252 → 305
    Homeobox; Homeobox domain

  4. XM_005580886.3 → XP_005580943.1  LIM/homeobox protein Lhx6 isoform X1

    See identical proteins and their annotated locations for XP_005580943.1

    UniProtKB/TrEMBL
    A0A2K5VMB9
    Related
    ENSMFAP00000025868.1
    Conserved Domains (3) summary
    cd09380
    Location:99 → 152
    LIM1_Lhx6; The first LIM domain of Lhx6
    cd09382
    Location:160 → 214
    LIM2_Lhx6; The second LIM domain of Lhx6
    pfam00046
    Location:252 → 305
    Homeobox; Homeobox domain

  5. XM_045373783.1 → XP_045229718.1  LIM/homeobox protein Lhx6 isoform X5

    UniProtKB/TrEMBL
    A0A2K5VM30
    Conserved Domains (3) summary
    cd09380
    Location:70 → 123
    LIM1_Lhx6; The first LIM domain of Lhx6
    cd09382
    Location:131 → 185
    LIM2_Lhx6; The second LIM domain of Lhx6
    pfam00046
    Location:223 → 276
    Homeobox; Homeobox domain

  6. XM_045373784.1 → XP_045229719.1  LIM/homeobox protein Lhx6 isoform X6

    Conserved Domains (2) summary
    cd09382
    Location:11 → 65
    LIM2_Lhx6; The second LIM domain of Lhx6
    pfam00046
    Location:103 → 156
    Homeobox; Homeobox domain

  7. XM_045373782.1 → XP_045229717.1  LIM/homeobox protein Lhx6 isoform X5

    UniProtKB/TrEMBL
    A0A2K5VM30
    Conserved Domains (3) summary
    cd09380
    Location:70 → 123
    LIM1_Lhx6; The first LIM domain of Lhx6
    cd09382
    Location:131 → 185
    LIM2_Lhx6; The second LIM domain of Lhx6
    pfam00046
    Location:223 → 276
    Homeobox; Homeobox domain

  8. XM_005580889.3 → XP_005580946.2  LIM/homeobox protein Lhx6 isoform X7

Nucleotide Protein
Heading Accession and Version

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