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NFIC nuclear factor I C [ Pseudopodoces humilis (Tibetan ground-tit) ]

Gene ID: 102110800, updated on 10-Mar-2024

Summary

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Gene symbol
NFIC
Gene description
nuclear factor I C
Gene type
protein coding
RefSeq status
MODEL
Organism
Pseudopodoces humilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Paridae; Pseudopodoces
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
101 current PseHum1.0 (GCF_000331425.1) Unplaced Scaffold NW_005087647.1 (897239..935784)

NW_005087647.1Genomic Context describing neighboring genes Neighboring gene mex-3 RNA binding family member D Neighboring gene unc-13 homolog A Neighboring gene small integral membrane protein 24 Neighboring gene deoxyhypusine hydroxylase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005087647.1 Unplaced Scaffold Reference PseHum1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear factor 1 C-type

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pseudopodoces humilis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PseHum1.0 Primary Assembly

Genomic

  1. NW_005087647.1 Reference PseHum1.0 Primary Assembly

    Range
    897239..935784
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014260054.1 → XP_014115529.1  nuclear factor 1 C-type isoform X2

    Conserved Domains (3) summary
    pfam10524
    Location:2 → 38
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
    pfam00859
    Location:208 → 501
    CTF_NFI; CTF/NF-I family transcription modulation region
    cl00055
    Location:60 → 164
    MH1; N-terminal Mad Homology 1 (MH1) domain

  2. XM_014260056.1 → XP_014115531.1  nuclear factor 1 C-type isoform X4

    Conserved Domains (3) summary
    pfam10524
    Location:10 → 47
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
    pfam00859
    Location:217 → 425
    CTF_NFI; CTF/NF-I family transcription modulation region
    cl00055
    Location:69 → 173
    MH1; N-terminal Mad Homology 1 (MH1) domain

  3. XM_005531344.2 → XP_005531401.1  nuclear factor 1 C-type isoform X1

    See identical proteins and their annotated locations for XP_005531401.1

    Conserved Domains (3) summary
    pfam10524
    Location:10 → 47
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
    pfam00859
    Location:217 → 510
    CTF_NFI; CTF/NF-I family transcription modulation region
    cl00055
    Location:69 → 173
    MH1; N-terminal Mad Homology 1 (MH1) domain

  4. XM_014260057.1 → XP_014115532.1  nuclear factor 1 C-type isoform X5

    Conserved Domains (3) summary
    pfam10524
    Location:10 → 47
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
    pfam00859
    Location:217 → 424
    CTF_NFI; CTF/NF-I family transcription modulation region
    cl00055
    Location:69 → 173
    MH1; N-terminal Mad Homology 1 (MH1) domain

  5. XM_014260055.1 → XP_014115530.1  nuclear factor 1 C-type isoform X3

    Conserved Domains (4) summary
    cl00055
    Location:69 → 173
    MH1; N-terminal Mad Homology 1 (MH1) domain
    pfam00859
    Location:193 → 486
    CTF_NFI; CTF/NF-I family transcription modulation region
    pfam10524
    Location:9 → 47
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
    cl10080
    Location:303 → 379
    RPE65; Retinal pigment epithelial membrane protein
Nucleotide Protein
Heading Accession and Version

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