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SF3B1 splicing factor 3b subunit 1 [ Pseudopodoces humilis (Tibetan ground-tit) ]

Gene ID: 102108134, updated on 10-Mar-2024

Summary

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Gene symbol
SF3B1
Gene description
splicing factor 3b subunit 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Pseudopodoces humilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Paridae; Pseudopodoces
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
26
Annotation release Status Assembly Chr Location
101 current PseHum1.0 (GCF_000331425.1) Unplaced Scaffold NW_005087560.1 (27933414..27956542)

NW_005087560.1Genomic Context describing neighboring genes Neighboring gene heat shock protein family D (Hsp60) member 1 Neighboring gene coenzyme Q10B Neighboring gene ankyrin repeat domain 44 Neighboring gene post-GPI attachment to proteins inositol deacylase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005087560.1 Unplaced Scaffold Reference PseHum1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in spliceosomal complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U12-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type prespliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
splicing factor 3B subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pseudopodoces humilis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PseHum1.0 Primary Assembly

Genomic

  1. NW_005087560.1 Reference PseHum1.0 Primary Assembly

    Range
    27933414..27956542
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005519929.2 → XP_005519986.1  splicing factor 3B subunit 1 isoform X1

    See identical proteins and their annotated locations for XP_005519986.1

    Conserved Domains (4) summary
    smart01104
    Location:233 → 379
    CTD; Spt5 C-terminal nonapeptide repeat binding Spt4
    COG5181
    Location:443 → 1301
    HSH155; U2 snRNP spliceosome subunit [RNA processing and modification]
    sd00044
    Location:847 → 871
    HEAT; HEAT repeat [structural motif]
    pfam08920
    Location:329 → 439
    SF3b1; Splicing factor 3B subunit 1

  2. XM_005519930.2 → XP_005519987.1  splicing factor 3B subunit 1 isoform X2

    See identical proteins and their annotated locations for XP_005519987.1

Nucleotide Protein
Heading Accession and Version

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