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LIMCH1 LIM and calponin homology domains 1 [ Pseudopodoces humilis (Tibetan ground-tit) ]

Gene ID: 102106091, updated on 10-Mar-2024

Summary

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Gene symbol
LIMCH1
Gene description
LIM and calponin homology domains 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Pseudopodoces humilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Paridae; Pseudopodoces
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
35
Annotation release Status Assembly Chr Location
101 current PseHum1.0 (GCF_000331425.1) Unplaced Scaffold NW_005087556.1 (29441825..29614027, complement)

NW_005087556.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 33 Neighboring gene paired like homeobox 2B Neighboring gene ubiquitin C-terminal hydrolase L1 Neighboring gene amyloid beta precursor protein binding family B member 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005087556.1 Unplaced Scaffold Reference PseHum1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables myosin II head/neck binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of stress fiber assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of focal adhesion assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in stress fiber IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LIM and calponin homology domains-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pseudopodoces humilis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PseHum1.0 Primary Assembly

Genomic

  1. NW_005087556.1 Reference PseHum1.0 Primary Assembly

    Range
    29441825..29614027 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014261606.1 → XP_014117081.1  LIM and calponin homology domains-containing protein 1 isoform X2

    Conserved Domains (3) summary
    cd00014
    Location:26 → 114
    CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
    cd08368
    Location:1655 → 1713
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
    pfam15949
    Location:956 → 1054
    DUF4757; Domain of unknown function (DUF4757)

  2. XM_014261597.1 → XP_014117072.1  LIM and calponin homology domains-containing protein 1 isoform X1

    Conserved Domains (3) summary
    cd00014
    Location:26 → 114
    CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
    cd08368
    Location:1668 → 1726
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
    pfam15949
    Location:969 → 1067
    DUF4757; Domain of unknown function (DUF4757)

  3. XM_014261615.1 → XP_014117090.1  LIM and calponin homology domains-containing protein 1 isoform X3

    Conserved Domains (2) summary
    cd08368
    Location:1516 → 1574
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
    pfam15949
    Location:817 → 915
    DUF4757; Domain of unknown function (DUF4757)
Nucleotide Protein
Heading Accession and Version

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