U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

PCDH1 protocadherin 1 [ Pseudopodoces humilis (Tibetan ground-tit) ]

Gene ID: 102105700, updated on 10-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
PCDH1
Gene description
protocadherin 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Pseudopodoces humilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Paridae; Pseudopodoces
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
101 current PseHum1.0 (GCF_000331425.1) Unplaced Scaffold NW_005087681.1 (290344..342326)

NW_005087681.1Genomic Context describing neighboring genes Neighboring gene PCTP-like protein Neighboring gene ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3 Neighboring gene DAP3 binding cell death enhancer 1 Neighboring gene protocadherin 12

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_005087681.1 Unplaced Scaffold Reference PseHum1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
protocadherin-1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Pseudopodoces humilis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PseHum1.0 Primary Assembly

Genomic

  1. NW_005087681.1 Reference PseHum1.0 Primary Assembly

    Range
    290344..342326
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005532661.2 → XP_005532718.1  protocadherin-1 isoform X1

    Conserved Domains (3) summary
    cd11304
    Location:504 → 600
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08374
    Location:807 → 1017
    Protocadherin; Protocadherin
    cl09101
    Location:54 → 134
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

  2. XM_014261215.1 → XP_014116690.1  protocadherin-1 isoform X2

    Conserved Domains (3) summary
    cd11304
    Location:504 → 600
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08374
    Location:807 → 1017
    Protocadherin; Protocadherin
    cl09101
    Location:54 → 134
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.