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TMLHE trimethyllysine hydroxylase, epsilon [ Pseudopodoces humilis (Tibetan ground-tit) ]

Gene ID: 102099827, updated on 10-Mar-2024

Summary

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Gene symbol
TMLHE
Gene description
trimethyllysine hydroxylase, epsilon
Gene type
protein coding
RefSeq status
MODEL
Organism
Pseudopodoces humilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Paridae; Pseudopodoces
Orthologs
human mouse all
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Genomic context

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See TMLHE in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
101 current PseHum1.0 (GCF_000331425.1) Unplaced Scaffold NW_005087591.1 (683642..694237, complement)

NW_005087591.1Genomic Context describing neighboring genes Neighboring gene H(+)/Cl(-) exchange transporter 5 Neighboring gene tumor necrosis factor ligand superfamily member 10-like Neighboring gene papilin-like Neighboring gene sprouty RTK signaling antagonist 3 Neighboring gene brain-specific homeobox/POU domain protein 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005087591.1 Unplaced Scaffold Reference PseHum1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables trimethyllysine dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carnitine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
trimethyllysine dioxygenase, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pseudopodoces humilis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PseHum1.0 Primary Assembly

Genomic

  1. NW_005087591.1 Reference PseHum1.0 Primary Assembly

    Range
    683642..694237 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014256403.1 → XP_014111878.1  trimethyllysine dioxygenase, mitochondrial

    Conserved Domains (3) summary
    cd00250
    Location:145 → 405
    CAS_like; Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases ...
    TIGR02410
    Location:67 → 416
    carnitine_TMLD; trimethyllysine dioxygenase
    pfam06155
    Location:51 → 130
    DUF971; Protein of unknown function (DUF971)

  2. XM_014256402.1 → XP_014111877.1  trimethyllysine dioxygenase, mitochondrial

    Conserved Domains (3) summary
    cd00250
    Location:145 → 405
    CAS_like; Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases ...
    TIGR02410
    Location:67 → 416
    carnitine_TMLD; trimethyllysine dioxygenase
    pfam06155
    Location:51 → 130
    DUF971; Protein of unknown function (DUF971)

  3. XM_014256401.1 → XP_014111876.1  trimethyllysine dioxygenase, mitochondrial

    Conserved Domains (3) summary
    cd00250
    Location:145 → 405
    CAS_like; Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases ...
    TIGR02410
    Location:67 → 416
    carnitine_TMLD; trimethyllysine dioxygenase
    pfam06155
    Location:51 → 130
    DUF971; Protein of unknown function (DUF971)

  4. XM_014256400.1 → XP_014111875.1  trimethyllysine dioxygenase, mitochondrial

    Conserved Domains (3) summary
    cd00250
    Location:145 → 405
    CAS_like; Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases ...
    TIGR02410
    Location:67 → 416
    carnitine_TMLD; trimethyllysine dioxygenase
    pfam06155
    Location:51 → 130
    DUF971; Protein of unknown function (DUF971)

  5. XM_005527369.2 → XP_005527426.1  trimethyllysine dioxygenase, mitochondrial

    Conserved Domains (3) summary
    cd00250
    Location:145 → 405
    CAS_like; Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases ...
    TIGR02410
    Location:67 → 416
    carnitine_TMLD; trimethyllysine dioxygenase
    pfam06155
    Location:51 → 130
    DUF971; Protein of unknown function (DUF971)
Nucleotide Protein
Heading Accession and Version

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