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PKD1L2 polycystin-1-like protein 2 [ Columba livia (rock pigeon) ]

Gene ID: 102096369, updated on 10-Mar-2024

Summary

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Gene symbol
PKD1L2
Gene description
polycystin-1-like protein 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Columba livia
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Columbiformes; Columbidae; Columba
Orthologs
human all
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Genomic context

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Location:
chromosome: Un
Exon count:
43
Annotation release Status Assembly Chr Location
102 current Cliv_1.0 (GCF_000337935.1) Unplaced Scaffold NW_004973333.1 (9595329..9634141)

NW_004973333.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110360341 Neighboring gene gigaxonin Neighboring gene beta-carotene oxygenase 1 Neighboring gene uncharacterized protein C16orf46 homolog Neighboring gene glycine cleavage system protein H

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004973333 Unplaced Scaffold Reference Cliv_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in detection of mechanical stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: polycystic kidney disease protein 1-like 2
Names
polycystin 1 like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Columba livia Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cliv_1.0 Primary Assembly

Genomic

  1. NW_004973333.1 Reference Cliv_1.0 Primary Assembly

    Range
    9595329..9634141
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021290730.1 → XP_021146405.1  LOW QUALITY PROTEIN: polycystic kidney disease protein 1-like 2

    Conserved Domains (6) summary
    cd00037
    Location:89 → 206
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    smart00303
    Location:1383 → 1432
    GPS; G-protein-coupled receptor proteolytic site domain
    cd01752
    Location:1495 → 1614
    PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
    pfam02010
    Location:647 → 973
    REJ; REJ domain
    pfam02140
    Location:222 → 303
    Gal_Lectin; Galactose binding lectin domain
    cl27887
    Location:2096 → 2502
    PKD_channel; Polycystin cation channel
Nucleotide Protein
Heading Accession and Version

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