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GGPS1 geranylgeranyl diphosphate synthase 1 [ Columba livia (rock pigeon) ]

Gene ID: 102094057, updated on 10-Mar-2024

Summary

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Gene symbol
GGPS1
Gene description
geranylgeranyl diphosphate synthase 1
Locus tag
A306_05459
Gene type
protein coding
RefSeq status
MODEL
Organism
Columba livia
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Columbiformes; Columbidae; Columba
Orthologs
human mouse all
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Genomic context

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See GGPS1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
102 current Cliv_1.0 (GCF_000337935.1) Unplaced Scaffold NW_004973497.1 (7784708..7806130)

NW_004973497.1Genomic Context describing neighboring genes Neighboring gene RNA binding motif protein 34 Neighboring gene AT-rich interaction domain 4B Neighboring gene tubulin folding cofactor E Neighboring gene beta-1,3-N-acetylgalactosaminyltransferase 2 Neighboring gene uncharacterized LOC110363427 Neighboring gene G protein subunit gamma 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004973497 Unplaced Scaffold Reference Cliv_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables prenyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in isoprenoid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
geranylgeranyl pyrophosphate synthase
Names
Geranylgeranyl pyrophosphate synthetase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Columba livia Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cliv_1.0 Primary Assembly

Genomic

  1. NW_004973497.1 Reference Cliv_1.0 Primary Assembly

    Range
    7784708..7806130
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005508645.3 → XP_005508702.1  geranylgeranyl pyrophosphate synthase

    UniProtKB/TrEMBL
    A0A2I0MUW6
    Conserved Domains (1) summary
    pfam00348
    Location:9 → 249
    polyprenyl_synt; Polyprenyl synthetase
Nucleotide Protein
Heading Accession and Version

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