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PTPRA protein tyrosine phosphatase receptor type A [ Columba livia (rock pigeon) ]

Gene ID: 102086602, updated on 10-Mar-2024

Summary

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Gene symbol
PTPRA
Gene description
protein tyrosine phosphatase receptor type A
Gene type
protein coding
RefSeq status
MODEL
Organism
Columba livia
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Columbiformes; Columbidae; Columba
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
102 current Cliv_1.0 (GCF_000337935.1) Unplaced Scaffold NW_004973397.1 (1166915..1270001)

NW_004973397.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110361643 Neighboring gene mitochondrial antiviral signaling protein Neighboring gene uncharacterized LOC110361642 Neighboring gene neurophysin 1 Neighboring gene mitochondrial ribosomal protein S26

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004973397 Unplaced Scaffold Reference Cliv_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomic diversity and evolution of the head crest in the rock pigeon. Shapiro MD, et al. Science, 2013 Mar 1. PMID 23371554, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein tyrosine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
receptor-type tyrosine-protein phosphatase alpha
Names
Receptor-type tyrosine-protein phosphatase alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Columba livia Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cliv_1.0 Primary Assembly

Genomic

  1. NW_004973397.1 Reference Cliv_1.0 Primary Assembly

    Range
    1166915..1270001
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005506426.2 → XP_005506483.1  receptor-type tyrosine-protein phosphatase alpha isoform X1

    UniProtKB/TrEMBL
    A0A2I0MMG2, A0A2I0MMG4
    Conserved Domains (4) summary
    smart00194
    Location:258 → 518
    PTPc; Protein tyrosine phosphatase, catalytic domain
    cd00047
    Location:578 → 808
    PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
    pfam15102
    Location:116 → 258
    TMEM154; TMEM154 protein family
    cl25496
    Location:34 → 161
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  2. XM_021292874.1 → XP_021148549.1  receptor-type tyrosine-protein phosphatase alpha isoform X2

    UniProtKB/TrEMBL
    A0A2I0MMG4
    Conserved Domains (4) summary
    smart00194
    Location:253 → 513
    PTPc; Protein tyrosine phosphatase, catalytic domain
    cd00047
    Location:573 → 803
    PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
    pfam15102
    Location:111 → 253
    TMEM154; TMEM154 protein family
    cl25496
    Location:29 → 156
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  3. XM_021292875.1 → XP_021148550.1  receptor-type tyrosine-protein phosphatase alpha isoform X3

    UniProtKB/TrEMBL
    A0A2I0MMG4
    Conserved Domains (4) summary
    smart00194
    Location:245 → 505
    PTPc; Protein tyrosine phosphatase, catalytic domain
    cd00047
    Location:565 → 795
    PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
    pfam15102
    Location:103 → 245
    TMEM154; TMEM154 protein family
    cl25496
    Location:21 → 148
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  4. XM_021292876.1 → XP_021148551.1  receptor-type tyrosine-protein phosphatase alpha isoform X3

    UniProtKB/TrEMBL
    A0A2I0MMG4
    Conserved Domains (4) summary
    smart00194
    Location:245 → 505
    PTPc; Protein tyrosine phosphatase, catalytic domain
    cd00047
    Location:565 → 795
    PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
    pfam15102
    Location:103 → 245
    TMEM154; TMEM154 protein family
    cl25496
    Location:21 → 148
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
Nucleotide Protein
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