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PKNOX1 PBX/knotted 1 homeobox 1 [ Columba livia (rock pigeon) ]

Gene ID: 102085789, updated on 10-Mar-2024

Summary

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Gene symbol
PKNOX1
Gene description
PBX/knotted 1 homeobox 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Columba livia
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Columbiformes; Columbidae; Columba
Orthologs
human mouse all
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Genomic context

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See PKNOX1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
102 current Cliv_1.0 (GCF_000337935.1) Unplaced Scaffold NW_004973256.1 (142626..188156)

NW_004973256.1Genomic Context describing neighboring genes Neighboring gene WD repeat domain 4 Neighboring gene NADH:ubiquinone oxidoreductase subunit V3 Neighboring gene fibulin-2-like Neighboring gene cystathionine beta-synthase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004973256 Unplaced Scaffold Reference Cliv_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomic diversity and evolution of the head crest in the rock pigeon. Shapiro MD, et al. Science, 2013 Mar 1. PMID 23371554, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in angiogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein PKNOX1
Names
Homeobox protein PKNOX1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Columba livia Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cliv_1.0 Primary Assembly

Genomic

  1. NW_004973256.1 Reference Cliv_1.0 Primary Assembly

    Range
    142626..188156
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021286497.1 → XP_021142172.1  homeobox protein PKNOX1

    UniProtKB/TrEMBL
    A0A2I0M5J9
    Conserved Domains (2) summary
    pfam05920
    Location:278 → 316
    Homeobox_KN; Homeobox KN domain
    pfam16493
    Location:80 → 165
    Meis_PKNOX_N; N-terminal of Homeobox Meis and PKNOX1

  2. XM_021286495.1 → XP_021142170.1  homeobox protein PKNOX1

    UniProtKB/TrEMBL
    A0A2I0M5J9
    Conserved Domains (2) summary
    pfam05920
    Location:278 → 316
    Homeobox_KN; Homeobox KN domain
    pfam16493
    Location:80 → 165
    Meis_PKNOX_N; N-terminal of Homeobox Meis and PKNOX1

  3. XM_005501638.2 → XP_005501695.1  homeobox protein PKNOX1

    See identical proteins and their annotated locations for XP_005501695.1

    UniProtKB/TrEMBL
    A0A2I0M5J9
    Conserved Domains (2) summary
    pfam05920
    Location:278 → 316
    Homeobox_KN; Homeobox KN domain
    pfam16493
    Location:80 → 165
    Meis_PKNOX_N; N-terminal of Homeobox Meis and PKNOX1
Nucleotide Protein
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