U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

COL4A4 collagen type IV alpha 4 chain [ Columba livia (rock pigeon) ]

Gene ID: 102083797, updated on 10-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
COL4A4
Gene description
collagen type IV alpha 4 chain
Gene type
protein coding
RefSeq status
MODEL
Organism
Columba livia
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Columbiformes; Columbidae; Columba
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
47
Annotation release Status Assembly Chr Location
102 current Cliv_1.0 (GCF_000337935.1) Unplaced Scaffold NW_004973375.1 (197306..262581, complement)

NW_004973375.1Genomic Context describing neighboring genes Neighboring gene rhomboid domain containing 1 Neighboring gene uncharacterized LOC110361104 Neighboring gene collagen alpha-3(IV) chain Neighboring gene uncharacterized LOC110361126 Neighboring gene mitochondrial fission factor

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_004973375 Unplaced Scaffold Reference Cliv_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of collagen trimer IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
collagen alpha-4(IV) chain

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Columba livia Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cliv_1.0 Primary Assembly

Genomic

  1. NW_004973375.1 Reference Cliv_1.0 Primary Assembly

    Range
    197306..262581 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021292129.1 → XP_021147804.1  collagen alpha-4(IV) chain

    Conserved Domains (3) summary
    pfam01391
    Location:74 → 131
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01413
    Location:1435 → 1539
    C4; C-terminal tandem repeated domain in type 4 procollagen
    pfam09606
    Location:978 → 1428
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.