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RNF111 ring finger protein 111 [ Zonotrichia albicollis (white-throated sparrow) ]

Gene ID: 102073063, updated on 10-Mar-2024

Summary

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Gene symbol
RNF111
Gene description
ring finger protein 111
See related
Ensembl:ENSZALG00000001852
Gene type
protein coding
RefSeq status
MODEL
Organism
Zonotrichia albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Zonotrichia
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See RNF111 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
102 current Zonotrichia_albicollis-1.0.1 (GCF_000385455.1) Unplaced Scaffold NW_005081592.1 (3072752..3117138, complement)

NW_005081592.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 81 member A Neighboring gene myosin IE Neighboring gene cyclin B2 Neighboring gene SAFB like transcription modulator Neighboring gene MINDY lysine 48 deubiquitinase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005081592 Unplaced Scaffold Reference Zonotrichia_albicollis-1.0.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SMAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables SUMO polymer binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transforming growth factor beta receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase Arkadia

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zonotrichia albicollis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zonotrichia_albicollis-1.0.1

Genomic

  1. NW_005081592.1 Reference Zonotrichia_albicollis-1.0.1

    Range
    3072752..3117138 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014267638.2 → XP_014123113.1  E3 ubiquitin-protein ligase Arkadia isoform X2

    UniProtKB/TrEMBL
    A0A8D2M2Y5
    Related
    ENSZALP00000001811.1, ENSZALT00000003337.1
    Conserved Domains (2) summary
    pfam13639
    Location:931 → 972
    zf-RING_2; Ring finger domain
    pfam15303
    Location:18 → 277
    RNF111_N; E3 ubiquitin-protein ligase Arkadia N-terminus

  2. XM_014267636.2 → XP_014123111.1  E3 ubiquitin-protein ligase Arkadia isoform X1

    UniProtKB/TrEMBL
    A0A8D2M2Y5
    Conserved Domains (2) summary
    pfam13639
    Location:939 → 980
    zf-RING_2; Ring finger domain
    pfam15303
    Location:18 → 277
    RNF111_N; E3 ubiquitin-protein ligase Arkadia N-terminus
Nucleotide Protein
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