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ZEB1 zinc finger E-box binding homeobox 1 [ Zonotrichia albicollis (white-throated sparrow) ]

Gene ID: 102071685, updated on 10-Mar-2024

Summary

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Gene symbol
ZEB1
Gene description
zinc finger E-box binding homeobox 1
See related
Ensembl:ENSZALG00000016871
Gene type
protein coding
RefSeq status
MODEL
Organism
Zonotrichia albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Zonotrichia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
102 current Zonotrichia_albicollis-1.0.1 (GCF_000385455.1) Unplaced Scaffold NW_005081538.1 (10379670..10499712)

NW_005081538.1Genomic Context describing neighboring genes Neighboring gene supervillin Neighboring gene zinc finger protein 438 Neighboring gene Rho GTPase activating protein 12 Neighboring gene kinesin family member 5B

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005081538 Unplaced Scaffold Reference Zonotrichia_albicollis-1.0.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger E-box-binding homeobox 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zonotrichia albicollis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zonotrichia_albicollis-1.0.1

Genomic

  1. NW_005081538.1 Reference Zonotrichia_albicollis-1.0.1

    Range
    10379670..10499712
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005480362.3 → XP_005480419.1  zinc finger E-box-binding homeobox 1 isoform X3

    UniProtKB/TrEMBL
    A0A8D2NJS8
    Related
    ENSZALP00000021562.1, ENSZALT00000028137.1
    Conserved Domains (4) summary
    smart00389
    Location:573 → 609
    HOX; Homeodomain
    sd00017
    Location:886 → 906
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:220 → 242
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:926 → 951
    zf-H2C2_2; Zinc-finger double domain

  2. XM_005480361.3 → XP_005480418.1  zinc finger E-box-binding homeobox 1 isoform X1

    UniProtKB/TrEMBL
    A0A8D2NFL2, A0A8D2NJS8
    Related
    ENSZALP00000021563.1, ENSZALT00000028138.1
    Conserved Domains (4) summary
    smart00389
    Location:594 → 630
    HOX; Homeodomain
    sd00017
    Location:907 → 927
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:241 → 263
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:947 → 972
    zf-H2C2_2; Zinc-finger double domain

  3. XM_026796201.1 → XP_026652002.1  zinc finger E-box-binding homeobox 1 isoform X4

  4. XM_014270222.2 → XP_014125697.1  zinc finger E-box-binding homeobox 1 isoform X2

    UniProtKB/TrEMBL
    A0A8D2NJS8
    Conserved Domains (4) summary
    smart00389
    Location:580 → 616
    HOX; Homeodomain
    sd00017
    Location:893 → 913
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:227 → 249
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:933 → 958
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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