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EGR1 early growth response 1 [ Zonotrichia albicollis (white-throated sparrow) ]

Gene ID: 102068167, updated on 10-Mar-2024

Summary

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Gene symbol
EGR1
Gene description
early growth response 1
See related
Ensembl:ENSZALG00000015750
Gene type
protein coding
RefSeq status
MODEL
Organism
Zonotrichia albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Zonotrichia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
102 current Zonotrichia_albicollis-1.0.1 (GCF_000385455.1) Unplaced Scaffold NW_005081710.1 (1818851..1821986)

NW_005081710.1Genomic Context describing neighboring genes Neighboring gene lysine demethylase 3B Neighboring gene receptor accessory protein 2 Neighboring gene uncharacterized LOC113460026 Neighboring gene uncharacterized LOC102068347

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005081710 Unplaced Scaffold Reference Zonotrichia_albicollis-1.0.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Testosterone alters genomic responses to song and monoaminergic innervation of auditory areas in a seasonally breeding songbird. Matragrano LL, et al. Dev Neurobiol, 2013 Jun. PMID 23362219

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Testosterone decreases monoaminergic innervation of the ZENK/Egr-1 auditory pathway in male white-throated sparrows.
    Title: Testosterone alters genomic responses to song and monoaminergic innervation of auditory areas in a seasonally breeding songbird.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
early growth response protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zonotrichia albicollis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zonotrichia_albicollis-1.0.1

Genomic

  1. NW_005081710.1 Reference Zonotrichia_albicollis-1.0.1

    Range
    1818851..1821986
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005493078.3 → XP_005493135.1  early growth response protein 1

    UniProtKB/TrEMBL
    A0A8D2NDS6
    Related
    ENSZALP00000019960.1, ENSZALT00000026164.1
    Conserved Domains (6) summary
    COG5048
    Location:338 → 396
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:313 → 335
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:311 → 335
    zf-C2H2; Zinc finger, C2H2 type
    pfam11914
    Location:400 → 497
    DUF3432; Domain of unknown function (DUF3432)
    pfam11928
    Location:111 → 182
    DUF3446; Domain of unknown function (DUF3446)
    pfam13465
    Location:355 → 380
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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