U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

COL12A1 collagen type XII alpha 1 chain [ Zonotrichia albicollis (white-throated sparrow) ]

Gene ID: 102068095, updated on 10-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
COL12A1
Gene description
collagen type XII alpha 1 chain
See related
Ensembl:ENSZALG00000003004
Gene type
protein coding
RefSeq status
MODEL
Organism
Zonotrichia albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Zonotrichia
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
69
Annotation release Status Assembly Chr Location
102 current Zonotrichia_albicollis-1.0.1 (GCF_000385455.1) Unplaced Scaffold NW_005081654.1 (1505225..1605015, complement)

NW_005081654.1Genomic Context describing neighboring genes Neighboring gene CD109 molecule Neighboring gene uncharacterized LOC102067980 Neighboring gene cytochrome c oxidase subunit 7A2, mitochondrial Neighboring gene transmembrane protein 30A

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_005081654 Unplaced Scaffold Reference Zonotrichia_albicollis-1.0.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endodermal cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
collagen alpha-1(XII) chain

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Zonotrichia albicollis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zonotrichia_albicollis-1.0.1

Genomic

  1. NW_005081654.1 Reference Zonotrichia_albicollis-1.0.1

    Range
    1505225..1605015 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026795889.1 → XP_026651690.1  collagen alpha-1(XII) chain isoform X3

  2. XM_026795888.1 → XP_026651689.1  collagen alpha-1(XII) chain isoform X3

  3. XM_014269966.2 → XP_014125441.2  collagen alpha-1(XII) chain isoform X2

    UniProtKB/TrEMBL
    A0A8D2M6S0, A0A8D2QB45
    Related
    ENSZALP00000002922.1, ENSZALT00000004756.1
    Conserved Domains (5) summary
    pfam01391
    Location:2749 → 2875
    Collagen; Collagen triple helix repeat (20 copies)
    smart00210
    Location:2504 → 2696
    TSPN; Thrombospondin N-terminal -like domains
    cd00063
    Location:2102 → 2181
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd01482
    Location:1178 → 1341
    vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...
    pfam00041
    Location:1921 → 2000
    fn3; Fibronectin type III domain

  4. XM_014269965.2 → XP_014125440.2  collagen alpha-1(XII) chain isoform X1

    UniProtKB/TrEMBL
    A0A8D2M6S0

  5. XM_014269968.2 → XP_014125443.1  collagen alpha-1(XII) chain isoform X4

    UniProtKB/TrEMBL
    A0A8D2M6S0
    Related
    ENSZALP00000002928.1, ENSZALT00000004764.1
    Conserved Domains (5) summary
    pfam01391
    Location:2767 → 2893
    Collagen; Collagen triple helix repeat (20 copies)
    smart00210
    Location:2522 → 2714
    TSPN; Thrombospondin N-terminal -like domains
    cd00063
    Location:2120 → 2199
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd01482
    Location:1196 → 1359
    vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...
    pfam00041
    Location:1939 → 2018
    fn3; Fibronectin type III domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.