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TRIM36 tripartite motif containing 36 [ Zonotrichia albicollis (white-throated sparrow) ]

Gene ID: 102066153, updated on 10-Mar-2024

Summary

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Gene symbol
TRIM36
Gene description
tripartite motif containing 36
See related
Ensembl:ENSZALG00000013149
Gene type
protein coding
RefSeq status
MODEL
Organism
Zonotrichia albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Zonotrichia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
102 current Zonotrichia_albicollis-1.0.1 (GCF_000385455.1) Unplaced Scaffold NW_005081724.1 (367617..389960)

NW_005081724.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 112 Neighboring gene protein geranylgeranyltransferase type I subunit beta Neighboring gene potassium calcium-activated channel subfamily N member 2 Neighboring gene uncharacterized LOC113460061

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005081724 Unplaced Scaffold Reference Zonotrichia_albicollis-1.0.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase TRIM36

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zonotrichia albicollis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zonotrichia_albicollis-1.0.1

Genomic

  1. NW_005081724.1 Reference Zonotrichia_albicollis-1.0.1

    Range
    367617..389960
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026797117.1 → XP_026652918.1  E3 ubiquitin-protein ligase TRIM36 isoform X1

    UniProtKB/TrEMBL
    A0A8D2N1W8, A0A8D2N640
    Related
    ENSZALP00000016175.1, ENSZALT00000021664.1
    Conserved Domains (5) summary
    cd00021
    Location:209 → 247
    BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
    cd00063
    Location:429 → 507
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12894
    Location:515 → 718
    SPRY_PRY_TRIM36; PRY/SPRY domain in tripartite motif-containing protein 36 (TRIM36)
    cd16756
    Location:16 → 52
    RING-HC_TRIM36; RING finger, HC subclass, found in tripartite motif-containing protein 36 (TRIM36) and similar proteins
    cl25407
    Location:254 → 378
    ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

  2. XM_014271553.2 → XP_014127028.1  E3 ubiquitin-protein ligase TRIM36 isoform X2

    UniProtKB/TrEMBL
    A0A8D2N466, A0A8D2N640
    Related
    ENSZALP00000016176.1, ENSZALT00000021665.1
    Conserved Domains (5) summary
    cd00021
    Location:199 → 237
    BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
    cd00063
    Location:419 → 497
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam13445
    Location:21 → 49
    zf-RING_UBOX; RING-type zinc-finger
    cd12894
    Location:505 → 708
    SPRY_PRY_TRIM36; PRY/SPRY domain in tripartite motif-containing protein 36 (TRIM36)
    cl23765
    Location:244 → 368
    iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits
Nucleotide Protein
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