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ALKBH3 alkB homolog 3, alpha-ketoglutarate dependent dioxygenase [ Zonotrichia albicollis (white-throated sparrow) ]

Gene ID: 102064160, updated on 11-Apr-2024

Summary

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Gene symbol
ALKBH3
Gene description
alkB homolog 3, alpha-ketoglutarate dependent dioxygenase
Gene type
protein coding
RefSeq status
MODEL
Organism
Zonotrichia albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Zonotrichia
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
102 current Zonotrichia_albicollis-1.0.1 (GCF_000385455.1) Unplaced Scaffold NW_005081537.1 (20907268..20925947, complement)

NW_005081537.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113459555 Neighboring gene chromosome unknown C11orf96 homolog Neighboring gene hydroxysteroid 17-beta dehydrogenase 12 Neighboring gene uncharacterized LOC113459557

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005081537 Unplaced Scaffold Reference Zonotrichia_albicollis-1.0.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA alkylation repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-ketoglutarate-dependent dioxygenase alkB homolog 3
Names
alkB homolog 3, alpha-ketoglutaratedependent dioxygenase
alkB, alkylation repair homolog 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zonotrichia albicollis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zonotrichia_albicollis-1.0.1

Genomic

  1. NW_005081537.1 Reference Zonotrichia_albicollis-1.0.1

    Range
    20907268..20925947 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014267784.2 → XP_014123259.1  alpha-ketoglutarate-dependent dioxygenase alkB homolog 3

    UniProtKB/TrEMBL
    A0A8D2N0Z7
    Conserved Domains (1) summary
    pfam13532
    Location:85 → 269
    2OG-FeII_Oxy_2; 2OG-Fe(II) oxygenase superfamily
Nucleotide Protein
Heading Accession and Version

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