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SLITRK6 SLIT and NTRK like family member 6 [ Zonotrichia albicollis (white-throated sparrow) ]

Gene ID: 102064122, updated on 10-Mar-2024

Summary

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Gene symbol
SLITRK6
Gene description
SLIT and NTRK like family member 6
See related
Ensembl:ENSZALG00000008438
Gene type
protein coding
RefSeq status
MODEL
Organism
Zonotrichia albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Zonotrichia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
102 current Zonotrichia_albicollis-1.0.1 (GCF_000385455.1) Unplaced Scaffold NW_005081586.1 (836632..845372, complement)

NW_005081586.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113459344 Neighboring gene uncharacterized LOC113459340 Neighboring gene uncharacterized LOC113459343 Neighboring gene uncharacterized LOC113459342

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005081586 Unplaced Scaffold Reference Zonotrichia_albicollis-1.0.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axonogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of presynapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SLIT and NTRK-like protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zonotrichia albicollis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zonotrichia_albicollis-1.0.1

Genomic

  1. NW_005081586.1 Reference Zonotrichia_albicollis-1.0.1

    Range
    836632..845372 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005487481.3 → XP_005487538.1  SLIT and NTRK-like protein 6

    UniProtKB/TrEMBL
    A0A8D2MQD0
    Related
    ENSZALP00000009898.1, ENSZALT00000013748.1
    Conserved Domains (5) summary
    smart00370
    Location:457 → 480
    LRR; Leucine-rich repeats, outliers
    sd00033
    Location:93 → 114
    LRR_RI; leucine-rich repeat [structural motif]
    pfam12799
    Location:410 → 449
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:410 → 470
    LRR_8; Leucine rich repeat
    cl15307
    Location:516 → 566
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain
Nucleotide Protein
Heading Accession and Version

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