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PBX1 PBX homeobox 1 [ Zonotrichia albicollis (white-throated sparrow) ]

Gene ID: 102063324, updated on 10-Mar-2024

Summary

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Gene symbol
PBX1
Gene description
PBX homeobox 1
See related
Ensembl:ENSZALG00000006177
Gene type
protein coding
RefSeq status
MODEL
Organism
Zonotrichia albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Zonotrichia
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
102 current Zonotrichia_albicollis-1.0.1 (GCF_000385455.1) Unplaced Scaffold NW_005081682.1 (525719..654645)

NW_005081682.1Genomic Context describing neighboring genes Neighboring gene microsomal glutathione S-transferase 3 Neighboring gene leucine rich repeat containing 52 Neighboring gene NUF2 component of NDC80 kinetochore complex Neighboring gene LIM homeobox transcription factor 1 alpha Neighboring gene retinoid X receptor gamma

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005081682 Unplaced Scaffold Reference Zonotrichia_albicollis-1.0.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in animal organ morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in embryonic organ development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in eye development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-B-cell leukemia transcription factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zonotrichia albicollis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zonotrichia_albicollis-1.0.1

Genomic

  1. NW_005081682.1 Reference Zonotrichia_albicollis-1.0.1

    Range
    525719..654645
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014270769.2 → XP_014126244.1  pre-B-cell leukemia transcription factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A8D2MFP4
    Related
    ENSZALP00000006887.1, ENSZALT00000009948.1
    Conserved Domains (2) summary
    cd00086
    Location:234 → 294
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam03792
    Location:40 → 232
    PBC; PBC domain

  2. XM_014270770.2 → XP_014126245.1  pre-B-cell leukemia transcription factor 1 isoform X2

    Conserved Domains (2) summary
    cd00086
    Location:234 → 294
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam03792
    Location:40 → 232
    PBC; PBC domain
Nucleotide Protein
Heading Accession and Version

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