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CSDE1 cold shock domain containing E1 [ Zonotrichia albicollis (white-throated sparrow) ]

Gene ID: 102062673, updated on 10-Mar-2024

Summary

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Gene symbol
CSDE1
Gene description
cold shock domain containing E1
See related
Ensembl:ENSZALG00000016731
Gene type
protein coding
RefSeq status
MODEL
Organism
Zonotrichia albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Zonotrichia
Orthologs
human mouse all
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Genomic context

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See CSDE1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
102 current Zonotrichia_albicollis-1.0.1 (GCF_000385455.1) Unplaced Scaffold NW_005081857.1 (201468..227379)

NW_005081857.1Genomic Context describing neighboring genes Neighboring gene bile acid receptor Neighboring gene thyroid stimulating hormone subunit beta Neighboring gene suppressor of IKBKE 1 Neighboring gene NRAS proto-oncogene, GTPase Neighboring gene adenosine monophosphate deaminase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005081857 Unplaced Scaffold Reference Zonotrichia_albicollis-1.0.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cold shock domain-containing protein E1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zonotrichia albicollis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zonotrichia_albicollis-1.0.1

Genomic

  1. NW_005081857.1 Reference Zonotrichia_albicollis-1.0.1

    Range
    201468..227379
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005495712.3 → XP_005495769.1  cold shock domain-containing protein E1

    UniProtKB/TrEMBL
    A0A8D2NFG4
    Related
    ENSZALP00000021360.1, ENSZALT00000027890.1
    Conserved Domains (4) summary
    smart00357
    Location:350 → 413
    CSP; Cold shock protein domain
    pfam00313
    Location:186 → 248
    CSD; 'Cold-shock' DNA-binding domain
    pfam12901
    Location:770 → 786
    SUZ-C; SUZ-C motif
    cl09927
    Location:519 → 580
    S1_like; S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. ...
Nucleotide Protein
Heading Accession and Version

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