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NSMCE1 NSE1 homolog, SMC5-SMC6 complex component [ Zonotrichia albicollis (white-throated sparrow) ]

Gene ID: 102061117, updated on 10-Mar-2024

Summary

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Gene symbol
NSMCE1
Gene description
NSE1 homolog, SMC5-SMC6 complex component
See related
Ensembl:ENSZALG00000008842
Gene type
protein coding
RefSeq status
MODEL
Organism
Zonotrichia albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Zonotrichia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
102 current Zonotrichia_albicollis-1.0.1 (GCF_000385455.1) Unplaced Scaffold NW_005081770.1 (154116..161568)

NW_005081770.1Genomic Context describing neighboring genes Neighboring gene interleukin-9 receptor Neighboring gene interleukin 21 receptor Neighboring gene interleukin 4 receptor Neighboring gene uncharacterized LOC106629840 Neighboring gene lysine demethylase 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005081770 Unplaced Scaffold Reference Zonotrichia_albicollis-1.0.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in postreplication repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Smc5-Smc6 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
non-structural maintenance of chromosomes element 1 homolog
Names
non-SMC element 1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zonotrichia albicollis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zonotrichia_albicollis-1.0.1

Genomic

  1. NW_005081770.1 Reference Zonotrichia_albicollis-1.0.1

    Range
    154116..161568
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026797697.1 → XP_026653498.1  non-structural maintenance of chromosomes element 1 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8D2MNZ7

  2. XM_026797698.1 → XP_026653499.1  non-structural maintenance of chromosomes element 1 homolog isoform X2

  3. XM_026797699.1 → XP_026653500.1  non-structural maintenance of chromosomes element 1 homolog isoform X3

  4. XM_005494504.3 → XP_005494561.1  non-structural maintenance of chromosomes element 1 homolog isoform X1

    See identical proteins and their annotated locations for XP_005494561.1

    UniProtKB/TrEMBL
    A0A8D2MNZ7
    Related
    ENSZALP00000010461.1, ENSZALT00000014466.1
    Conserved Domains (2) summary
    pfam07574
    Location:10 → 169
    SMC_Nse1; Nse1 non-SMC component of SMC5-6 complex
    cd16493
    Location:184 → 228
    RING-CH-C4HC3_NSE1; RING-CH finger, H2 subclass (C4HC3-type), found in non-structural maintenance of chromosomes element 1 homolog (NSE1) and similar proteins

RNA

  1. XR_003381958.1 RNA Sequence

  2. XR_003381957.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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