U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

VPS11 VPS11 core subunit of CORVET and HOPS complexes [ Geospiza fortis (medium ground-finch) ]

Gene ID: 102045093, updated on 10-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
VPS11
Gene description
VPS11 core subunit of CORVET and HOPS complexes
See related
Ensembl:ENSGFOG00000004422
Gene type
protein coding
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Thraupidae; Geospiza
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See VPS11 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054447.1 (1673474..1683607)

NW_005054447.1Genomic Context describing neighboring genes Neighboring gene C-X-C motif chemokine receptor 5 Neighboring gene DEAD-box helicase 6 Neighboring gene hydroxymethylbilane synthase Neighboring gene histone H2AX

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_005054447 Unplaced Scaffold Reference GeoFor_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein-macromolecule adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in organelle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vacuole organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle docking involved in exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of HOPS complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
vacuolar protein sorting-associated protein 11 homolog
Names
VPS11, CORVET/HOPS core subunit

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054447.1 Reference GeoFor_1.0

    Range
    1673474..1683607
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005427540.1 → XP_005427597.1  vacuolar protein sorting-associated protein 11 homolog

    UniProtKB/TrEMBL
    A0A6I9HPL8
    Related
    ENSGFOP00000006284.1, ENSGFOT00000006466.1
    Conserved Domains (3) summary
    cd16688
    Location:808 → 851
    RING-H2_Vps11; RING finger, H2 subclass, found in vacuolar protein sorting-associated protein 11 homolog (Vps11) and similar proteins
    pfam00637
    Location:400 → 524
    Clathrin; Region in Clathrin and VPS
    pfam12451
    Location:852 → 896
    VPS11_C; Vacuolar protein sorting protein 11 C terminal
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.