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CTNNB1 catenin beta 1 [ Geospiza fortis (medium ground-finch) ]

Gene ID: 102043187, updated on 10-Mar-2024

Summary

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Gene symbol
CTNNB1
Gene description
catenin beta 1
See related
Ensembl:ENSGFOG00000000878
Gene type
protein coding
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Thraupidae; Geospiza
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054361.1 (1496312..1504760)

NW_005054361.1Genomic Context describing neighboring genes Neighboring gene kinesin family member 15 Neighboring gene KIAA1143 ortholog Neighboring gene unc-51 like kinase 4 Neighboring gene trafficking kinesin protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005054361 Unplaced Scaffold Reference GeoFor_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-catenin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein phosphatase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catenin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
catenin beta-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054361.1 Reference GeoFor_1.0

    Range
    1496312..1504760
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005423925.2 → XP_005423982.1  catenin beta-1

    See identical proteins and their annotated locations for XP_005423982.1

    UniProtKB/TrEMBL
    A0A6I9HKX9
    Related
    ENSGFOP00000001251.1, ENSGFOT00000001271.1
    Conserved Domains (4) summary
    smart00185
    Location:350 → 390
    ARM; Armadillo/beta-catenin-like repeats
    COG5064
    Location:142 → 431
    SRP1; Karyopherin (importin) alpha [Intracellular trafficking and secretion]
    sd00043
    Location:402 → 427
    ARM; armadillo repeat [structural motif]
    pfam00514
    Location:583 → 622
    Arm; Armadillo/beta-catenin-like repeat
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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