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LOC102040296 fibrillin-2 [ Geospiza fortis (medium ground-finch) ]

Gene ID: 102040296, updated on 14-Dec-2023

Summary

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Gene symbol
LOC102040296
Gene description
fibrillin-2
Gene type
protein coding
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Thraupidae; Geospiza
Also known as
FBN3
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Genomic context

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Location:
chromosome: Un
Exon count:
66
Annotation release Status Assembly Chr Location
102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054621.1 (66021..139721, complement)

NW_005054621.1Genomic Context describing neighboring genes Neighboring gene translocase of inner mitochondrial membrane 44 Neighboring gene cortexin 1 Neighboring gene ankyrin repeat domain 24 Neighboring gene Epstein-Barr virus induced 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005054621 Unplaced Scaffold Reference GeoFor_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: fibrillin-2
Names
fibrillin 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054621.1 Reference GeoFor_1.0

    Range
    66021..139721 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031064740.1 → XP_030920600.1  LOW QUALITY PROTEIN: fibrillin-2

    UniProtKB/TrEMBL
    A0A8N5I4P8
    Conserved Domains (10) summary
    smart00179
    Location:532 → 573
    EGF_CA; Calcium-binding EGF-like domain
    cd00054
    Location:574 → 606
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam07645
    Location:2442 → 2481
    EGF_CA; Calcium-binding EGF domain
    pfam00683
    Location:960 → 1002
    TB; TB domain
    pfam12662
    Location:595 → 618
    cEGF; Complement Clr-like EGF-like
    pfam12947
    Location:1361 → 1396
    EGF_3; EGF domain
    pfam14670
    Location:1195 → 1230
    FXa_inhibition; Coagulation Factor Xa inhibitory site
    pfam18193
    Location:43 → 79
    Fibrillin_U_N; Fibrillin 1 unique N-terminal domain
    cl00057
    Location:2478 → 2514
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    cl21504
    Location:717 → 757
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
Nucleotide Protein
Heading Accession and Version

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