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CACTIN cactin, spliceosome C complex subunit [ Geospiza fortis (medium ground-finch) ]

Gene ID: 102040120, updated on 10-Mar-2024

Summary

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Gene symbol
CACTIN
Gene description
cactin, spliceosome C complex subunit
See related
Ensembl:ENSGFOG00000012009
Gene type
protein coding
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Thraupidae; Geospiza
Orthologs
human mouse all
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Genomic context

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See CACTIN in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054441.1 (991652..1000281, complement)

NW_005054441.1Genomic Context describing neighboring genes Neighboring gene GIPC PDZ domain containing family member 3 Neighboring gene thromboxane A2 receptor Neighboring gene phosphatidylinositol-4-phosphate 5-kinase type 1 gamma Neighboring gene tight junction protein 3 Neighboring gene amyloid beta precursor protein binding family A member 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005054441 Unplaced Scaffold Reference GeoFor_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA cis splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: cactin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054441.1 Reference GeoFor_1.0

    Range
    991652..1000281 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031062206.1 → XP_030918066.1  LOW QUALITY PROTEIN: cactin

    UniProtKB/TrEMBL
    A0A8N5I2F5
    Related
    ENSGFOP00000017710.1, ENSGFOT00000018290.1
    Conserved Domains (3) summary
    pfam09732
    Location:609 → 733
    CactinC_cactus; Cactus-binding C-terminus of cactin protein
    pfam10312
    Location:260 → 446
    Cactin_mid; Conserved mid region of cactin
    pfam15236
    Location:220 → 296
    CCDC66; Coiled-coil domain-containing protein 66
Nucleotide Protein
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