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PALLD palladin, cytoskeletal associated protein [ Geospiza fortis (medium ground-finch) ]

Gene ID: 102039848, updated on 10-Mar-2024

Summary

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Gene symbol
PALLD
Gene description
palladin, cytoskeletal associated protein
See related
Ensembl:ENSGFOG00000000415
Gene type
protein coding
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Thraupidae; Geospiza
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054297.1 (24222090..24406019, complement)

NW_005054297.1Genomic Context describing neighboring genes Neighboring gene SH3 domain containing ring finger 1 Neighboring gene carbonyl reductase 4 Neighboring gene uncharacterized LOC102034377 Neighboring gene annexin A10

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005054297 Unplaced Scaffold Reference GeoFor_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables axon guidance receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synapse organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuronal cell body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
palladin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054297.1 Reference GeoFor_1.0

    Range
    24222090..24406019 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031057202.1 → XP_030913062.1  palladin isoform X2

    UniProtKB/TrEMBL
    A0A8N5ENL2
    Related
    ENSGFOP00000001506.1, ENSGFOT00000001528.1
    Conserved Domains (2) summary
    cd05893
    Location:1314 → 1388
    Ig_Palladin_C; C-terminal immunoglobulin (Ig)-like domain of palladin
    pfam07679
    Location:1198 → 1288
    I-set; Immunoglobulin I-set domain

  2. XM_031057296.1 → XP_030913156.1  palladin isoform X4

    UniProtKB/TrEMBL
    A0A8N5EQH4
    Related
    ENSGFOP00000001646.1, ENSGFOT00000001669.1
    Conserved Domains (2) summary
    cd05893
    Location:1297 → 1371
    Ig_Palladin_C; C-terminal immunoglobulin (Ig)-like domain of palladin
    pfam07679
    Location:1181 → 1271
    I-set; Immunoglobulin I-set domain

  3. XM_031057345.1 → XP_030913205.1  palladin isoform X5

    UniProtKB/TrEMBL
    A0A8N5HYB9
    Related
    ENSGFOP00000001652.1, ENSGFOT00000001675.1
    Conserved Domains (2) summary
    cd05893
    Location:1143 → 1217
    Ig_Palladin_C; C-terminal immunoglobulin (Ig)-like domain of palladin
    pfam07679
    Location:1027 → 1117
    I-set; Immunoglobulin I-set domain

  4. XM_031057249.1 → XP_030913109.1  palladin isoform X3

    UniProtKB/TrEMBL
    A0A8N5EJB8
    Conserved Domains (2) summary
    cd05893
    Location:1304 → 1378
    Ig_Palladin_C; C-terminal immunoglobulin (Ig)-like domain of palladin
    pfam07679
    Location:1188 → 1278
    I-set; Immunoglobulin I-set domain

  5. XM_031057151.1 → XP_030913011.1  palladin isoform X1

    UniProtKB/TrEMBL
    A0A8N5HXY2
    Conserved Domains (2) summary
    cd05893
    Location:1321 → 1395
    Ig_Palladin_C; C-terminal immunoglobulin (Ig)-like domain of palladin
    pfam07679
    Location:1205 → 1295
    I-set; Immunoglobulin I-set domain

  6. XM_031057388.1 → XP_030913248.1  palladin isoform X6

    UniProtKB/TrEMBL
    A0A8N5EKQ2
    Conserved Domains (2) summary
    cd05893
    Location:893 → 967
    Ig_Palladin_C; C-terminal immunoglobulin (Ig)-like domain of palladin
    pfam07679
    Location:777 → 867
    I-set; Immunoglobulin I-set domain

  7. XM_031057444.1 → XP_030913304.1  palladin isoform X7

    UniProtKB/TrEMBL
    A0A8N5EJQ5
    Related
    ENSGFOP00000001622.1, ENSGFOT00000001645.1
    Conserved Domains (2) summary
    cd05893
    Location:886 → 960
    Ig_Palladin_C; C-terminal immunoglobulin (Ig)-like domain of palladin
    pfam07679
    Location:770 → 860
    I-set; Immunoglobulin I-set domain

  8. XM_031057534.1 → XP_030913394.1  palladin isoform X9

    UniProtKB/TrEMBL
    A0A8N5EJW3
    Conserved Domains (2) summary
    cd05893
    Location:413 → 487
    Ig_Palladin_C; C-terminal immunoglobulin (Ig)-like domain of palladin
    pfam07679
    Location:297 → 387
    I-set; Immunoglobulin I-set domain

  9. XM_031057487.1 → XP_030913347.1  palladin isoform X8

    UniProtKB/TrEMBL
    A0A8N5EP64
    Related
    ENSGFOP00000001612.1, ENSGFOT00000001635.1
    Conserved Domains (2) summary
    cd05893
    Location:562 → 636
    Ig_Palladin_C; C-terminal immunoglobulin (Ig)-like domain of palladin
    pfam07679
    Location:446 → 536
    I-set; Immunoglobulin I-set domain
Nucleotide Protein
Heading Accession and Version

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