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LAMA3 laminin subunit alpha 3 [ Geospiza fortis (medium ground-finch) ]

Gene ID: 102039057, updated on 10-Mar-2024

Summary

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Gene symbol
LAMA3
Gene description
laminin subunit alpha 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Thraupidae; Geospiza
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
77
Annotation release Status Assembly Chr Location
102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054305.1 (2649364..2750347)

NW_005054305.1Genomic Context describing neighboring genes Neighboring gene regulator of MON1-CCZ1 Neighboring gene NPC intracellular cholesterol transporter 1 Neighboring gene ankyrin repeat domain 29 Neighboring gene tetratricopeptide repeat domain 39C Neighboring gene oxysterol binding protein like 1A

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005054305 Unplaced Scaffold Reference GeoFor_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054305.1 Reference GeoFor_1.0

    Range
    2649364..2750347
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031066606.1 → XP_030922466.1  laminin subunit alpha-3

    UniProtKB/TrEMBL
    A0A8N5F7C8
    Conserved Domains (9) summary
    smart00180
    Location:600 → 650
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    cd00055
    Location:1245 → 1287
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2965 → 3107
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    TIGR02168
    Location:1925 → 2258
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam06008
    Location:1829 → 2086
    Laminin_I; Laminin Domain I
    pfam00052
    Location:1498 → 1634
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:1336 → 1387
    Laminin_EGF; Laminin EGF domain
    pfam00055
    Location:3 → 205
    Laminin_N; Laminin N-terminal (Domain VI)
    pfam06009
    Location:2268 → 2396
    Laminin_II; Laminin Domain II
Nucleotide Protein
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